PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 476090 | ||||||||
Common Name | ARALYDRAFT_476090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 34619.1 Da PI: 8.3226 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.6e-16 | 71 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia++++ gR++k+c++rw++ 476090 71 RGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQ-GRSGKSCRLRWFNQ 116 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 59.4 | 8.1e-19 | 123 | 166 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++++k++w+ 476090 123 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNSVKNHWHV 166 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.637 | 66 | 117 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 69 | 164 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.5E-14 | 70 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 71 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-26 | 72 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.58E-12 | 74 | 115 | No hit | No description |
PROSITE profile | PS51294 | 27.112 | 118 | 172 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 122 | 170 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-15 | 123 | 165 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-21 | 125 | 171 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.30E-11 | 125 | 165 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MSEDQHRWMD QIASSDYFSL NIDNDQHLRS YYTSHREEER NPNQSDYSNC NKKDTTVYGS 60 CGHSSKASVS RGHWRPAEDT KLKELVAVYG PQNWNLIAEK LQGRSGKSCR LRWFNQLDPR 120 INRRAFTEEE EERLMQAHRL YGNKWAMIAR LFPGRTDNSV KNHWHVIMAR KFREQSSAYR 180 RRKTMLPLKP LINPNPHLFN AFDPTRLALT HLVSNDQKEL MLPIPCFPGY DHGNEIPLMV 240 DMFQNEMMVG EYIAWTQEST TFDFLKQTGK SEMFERMNEE KKPPFFDFLG LGTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-33 | 69 | 172 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 476090 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF249308 | 0.0 | AF249308.1 Arabidopsis thaliana putative transcription factor (MYB105) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887243.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB105 | ||||
Swissprot | Q9SEZ4 | 0.0 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | D7KXG8 | 0.0 | D7KXG8_ARALL; MYB105 | ||||
STRING | fgenesh2_kg.2__1220__AT1G69560.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 0.0 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | 476090 |
Entrez Gene | 9324787 |
Publications ? help Back to Top | |||
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