PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476042
Common NameARALYDRAFT_476042
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family YABBY
Protein Properties Length: 182aa    MW: 19750.5 Da    PI: 10.0212
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY137.61.4e-42161565163
   YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenede 107
              ++e++ yv+C+ Cntilav +P + ++ +vtv+CGhC +l  ++      + + + h        +   l  + +++   + k+ s+s+s ss   +++++ 
  476042  16 PQTEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNLSFLTT-----TPPLQGH--------VS--LTLQMQSFGGSEYKKGSSSSSSSS---TSSDQP 100
             679************************************9755332.....2333333........32..333445566666666666666555...345666 PP

   YABBY 108 evprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
              +p +p v++PPek+qr Psaynrf+++eiqrik++nP+i hreafsaaaknWa +
  476042 101 PSPTPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156
             7787788***********************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-4918156IPR006780YABBY protein
SuperFamilySSF470951.27E-8100155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.1E-5110155IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MNLEEKPTMA ASRASPQTEH LYYVRCSICN TILAVGIPLK RMLDTVTVKC GHCGNLSFLT  60
TTPPLQGHVS LTLQMQSFGG SEYKKGSSSS SSSSTSSDQP PSPTPPFVVK PPEKKQRLPS  120
AYNRFMRDEI QRIKSANPEI PHREAFSAAA KNWAKYIPNS PTSITSGGHN MIHGLGFGEK  180
K*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap476042
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1326060.0AF132606.1 Arabidopsis thaliana transcription factor CRC mRNA, complete cds.
GenBankAK2296090.0AK229609.1 Arabidopsis thaliana mRNA for transcription factor CRC, complete cds, clone: RAFL19-52-F14.
GenBankBT0086180.0BT008618.1 Arabidopsis thaliana clone RAFL19-52-F14 (R50809) putative transcription factor CRC (At1g69180) mRNA, complete cds.
GenBankDQ4464120.0DQ446412.1 Arabidopsis thaliana clone pENTR221-At1g69180 transcription factor CRC (At1g69180) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888705.11e-133protein CRABS CLAW
SwissprotQ8L9251e-116CRC_ARATH; Protein CRABS CLAW
TrEMBLD7KWZ01e-132D7KWZ0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__1172__AT1G69180.11e-133(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97252835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-117YABBY family protein
Publications ? help Back to Top
  1. Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
    The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
    Ann. Bot., 2014. 114(7): p. 1535-44
    [PMID:24989787]
  2. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]
  3. Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
    Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
    Nat Commun, 2017. 8(1): p. 1125
    [PMID:29066759]
  4. Yamaguchi N, et al.
    Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
    Nat Commun, 2018. 9(1): p. 5290
    [PMID:30538233]