PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 476029 | ||||||||
Common Name | ARALYDRAFT_476029 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 34145.5 Da PI: 5.0298 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.1 | 2.1e-15 | 47 | 96 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lrel+P++ +K + a+ L ++++Y+++Lq 476029 47 RSKHSVTEQRRRSKINERFQILRELIPNS----EQKRDTASFLLEVIDYVQYLQ 96 899*************************8....79******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.22E-18 | 43 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.3E-22 | 44 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.355 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.66E-14 | 47 | 100 | No hit | No description |
Pfam | PF00010 | 9.0E-13 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-11 | 51 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MRTGKGNQEE EDYGEEDFSS KREGPSSNTT VHSNTDSKEN DKASAIRSKH SVTEQRRRSK 60 INERFQILRE LIPNSEQKRD TASFLLEVID YVQYLQEKVQ KYEGSYPGWS QEPTKLTPWR 120 NNHWRVQSLA NHPVAINNGS GPGIPFPGKF EENTVTSTPA IVAEPQIPIE SDKGRAITGI 180 SIESQPELDD KGLPPLQPIL PMVQGEQANE CPATSDGLRQ SNDLVIEGGT ISISSAYSHE 240 LLNSLTQALQ NAGIDLSHAK LSVQIDLGKR ANQGLTHDEP SSKNPLSSDT QARDPSIEEE 300 SEHSHKRM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 476029 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT002352 | 0.0 | BT002352.1 Arabidopsis thaliana clone C104950 putative DNA-binding protein (At1g69010) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890489.1 | 0.0 | transcription factor BIM2 isoform X1 | ||||
Swissprot | Q9CAA4 | 0.0 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | D7KWX4 | 0.0 | D7KWX4_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.2__1159__AT1G69010.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5987 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 0.0 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | 476029 |
Entrez Gene | 9324759 |
Publications ? help Back to Top | |||
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