PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476021
Common NameARALYDRAFT_476021
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 488aa    MW: 52641.2 Da    PI: 6.277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476021genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46.1e-09312360355
             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  476021 312 NSHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 360
             58*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.68E-11307364No hitNo description
SuperFamilySSF474592.62E-17307378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.478309359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-17310377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-6312360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDLSEKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL  60
WYDPTSVQAM GYGGFNGGNA SSSSFRGNID RSLEMGWNLP NLLPPKGNGL FLPNASTFLP  120
PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNPES IGLFLQGGGT MQGQCQCDEL  180
NVGEPHNDVS TAVKDPTVRS CEQAKPNVPG SGNVSEDTQS SGGNGRKGRE TSSNTKKRKR  240
NGQVNSEAAQ SHRSQQSEEE PDNNGDKKRN SEQSPNSPGN KTNSGKRQGK QSSDLPKDGY  300
IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ  360
RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT TPFTPNMAMA YPPLPHGFMQ  420
QTLSSIGRTI SSPLSSMNGG FKRQETNGWE GDLQNVIHIN YGAGDVTPDP QAAATASLPA  480
ANMKVEP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap476021
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1282990.0AY128299.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
GenBankBT0022590.0BT002259.1 Arabidopsis thaliana At1g68920/T6L1_10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891421.10.0transcription factor bHLH49
RefseqXP_020891422.10.0transcription factor bHLH49
SwissprotQ9CAA90.0BH049_ARATH; Transcription factor bHLH49
TrEMBLD7KWW60.0D7KWW6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.2__1151__AT1G68920.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]