PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 476011 | ||||||||
Common Name | ARALYDRAFT_476011 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | RAV | ||||||||
Protein Properties | Length: 353aa MW: 39413.4 Da PI: 9.7205 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.8e-13 | 63 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f eeAa+ ++ a+++++g 476011 63 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEQEEAARSYDIAARRFRG 111 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 102.5 | 2.3e-32 | 188 | 288 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+k+ tpsdv+k++rlv+pk++ae+h ++++ + +ed +g++W+++++y+++s++yvltkGW++Fvk+++L++gD+v+F+++ +++l++ 476011 188 FEKAVTPSDVGKLNRLVIPKQHAEKHfplpspsP-AVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLQAGDVVTFERSTGLDRQLYID 288 89*************************9988743.345999*************************************************775555556655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.44E-16 | 63 | 119 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.7E-8 | 63 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.37E-26 | 63 | 121 | No hit | No description |
SMART | SM00380 | 4.4E-31 | 64 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.271 | 64 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-20 | 64 | 119 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-41 | 181 | 293 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-32 | 185 | 291 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.24E-30 | 187 | 278 | No hit | No description |
SMART | SM01019 | 2.4E-27 | 188 | 293 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.0E-30 | 188 | 289 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.24 | 188 | 293 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDSSCIDEIS SSTSESFSAT ATLSPPSHPA AALRLHRMGS GGSSVVLDPE NGLETESRKL 60 PSSKYKGVVP QPNGRWGAQI YEKHQRVWLG TFNEQEEAAR SYDIAARRFR GRDAVVNFKN 120 VLEDGDLAFL EAHSKAEIVD MLRKHTYADE LEQNNKRRLF LSVDANGKRN GSSTTQNDNV 180 LKTREVLFEK AVTPSDVGKL NRLVIPKQHA EKHFPLPSPS PAVTKGVLIN FEDVNGKVWR 240 FRYSYWNSSQ SYVLTKGWSR FVKEKNLQAG DVVTFERSTG LDRQLYIDWK ARSGPREDPV 300 HVVVRLFGVD IFNATTVKPN DVVAVCGGKR SRDVDDMFAL RCSKKQAIIN AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 4e-62 | 185 | 298 | 11 | 123 | DNA-binding protein RAV1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00025 | PBM | Transfer from AT1G68840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 476011 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011665 | 0.0 | AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence. | |||
GenBank | AC011914 | 0.0 | AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence. | |||
GenBank | AF360312 | 0.0 | AF360312.1 Arabidopsis thaliana putative DNA-binding protein(RAV2 (At1g68840) mRNA, complete cds. | |||
GenBank | AY056361 | 0.0 | AY056361.1 Arabidopsis thaliana putative DNA-binding protein RAV2 (At1g68840) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891387.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
Swissprot | P82280 | 0.0 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | D7KWV4 | 0.0 | D7KWV4_ARALL; AP2 domain-containing protein RAP2.8 | ||||
STRING | fgenesh2_kg.2__1141__AT1G68840.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 0.0 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | 476011 |
Entrez Gene | 9324749 |