PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 476008
Common NameARALYDRAFT_476008
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 361aa    MW: 39691.2 Da    PI: 5.962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
476008genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.75e-14168214354
             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
             ++h+e+ErrRR+riN+ +++Lr++lP+      +K +Ka+ L ++++++k+L
  476008 168 KSHSEAERRRRERINNHLAKLRSILPNT-----TKTDKASLLAEVIQHVKEL 214
             79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.85165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11168214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-14169223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-14169224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-12171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.34E-4178217No hitNo description
Gene3DG3DSA:3.30.70.2603.2E-4254309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MCAKKEEAED SSGAMNNIQN YQNDLFFHQL ISHHHDPSQT ETFGASGNVG SGFTIFSQDS  60
VSPIWSLPPT TSIQPPFDQF PPPSSSPASF YGSFFNRSRP HHQGLQFGYE GFGGATSAAH  120
HHHEQLRILS EALGPVVQAG SGPFGLQAEL GKMTAQEIMD AKALAASKSH SEAERRRRER  180
INNHLAKLRS ILPNTTKTDK ASLLAEVIQH VKELKSETSV ISETNLIPTE SDELTVAFTE  240
EEETGDGRFV IKASLCCEDR SDLLPDMIKT LKAMRLKTLK AEITTVGGRV KNVLFVTGEE  300
SSGEEVEEEY CIGTIEEALK AVMEKNKVEE SSSSGNAKRQ RMSSHNTITI VEQQQQHHQR  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173178ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMap476008
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0721610.0AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
GenBankAY1229830.0AY122983.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020891060.10.0transcription factor bHLH30
SwissprotQ9S7Y10.0BH030_ARATH; Transcription factor bHLH30
TrEMBLD7KWG60.0D7KWG6_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.2__1138__AT1G68810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70482843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]