PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 475777
Common NameARALYDRAFT_475777
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 328aa    MW: 36987.7 Da    PI: 8.2409
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
475777genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH48.21.7e-15252276226
              -S---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
              ktelC+ +++tG C+yGd+C+FaHg
   475777 252 KTELCNKWQETGACPYGDNCQFAHG 276
              9***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.9E-19245283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-11248282IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-8250277IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939250278IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-12252276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-12284317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-8284319IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-5288315IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972288316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051511Biological Processnegative regulation of unidimensional cell growth
GO:1901347Biological Processnegative regulation of secondary cell wall biogenesis
GO:0003729Molecular FunctionmRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MEKLASSTIT DLAYVTAINS PPPPLSPLSE KSFNNKHQEE FAASFASLYN SIFSPESQFP  60
ISLSLSPSPP SSSSPPARVD TTTEHRLRQA RLILEYDELN EHYELCLNRL QSLMTELDSL  120
RHENDSLRFE NSDLLKLIHL STSSSSSSSS VSPPPIHNHN RQFRHQISDF GPIHKHSRSV  180
KRNSLPKSIS VRSPGYLKIN HGFGVSDRQT SQLSFTSQHS SDSVSSQKVC VVPTKGEREA  240
LELEVYRQGM MKTELCNKWQ ETGACPYGDN CQFAHGIGEL RPVIRHPRYK TEVCRMIVTG  300
AMCPYGHRCH FRHSLTDQER MMMMLTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-21251314467Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap475777
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132881e-138AC013288.7 Arabidopsis thaliana chromosome 1 BAC F4N21 genomic sequence, complete sequence.
GenBankCP0026841e-138CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002888548.10.0zinc finger CCCH domain-containing protein 14 isoform X1
SwissprotQ9C9N31e-160C3H14_ARATH; Zinc finger CCCH domain-containing protein 14
TrEMBLD7KUE40.0D7KUE4_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__907__AT1G66810.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106232533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.11e-150C3H family protein