PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 475739 | ||||||||
Common Name | ARALYDRAFT_475739 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 250aa MW: 28767.7 Da PI: 8.4885 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd ll +++ ++G W+ ++ + g++R++k+c++rw++yl 475739 10 KGTWTAEEDSLLRQCIDKYGESKWHQVPLRAGLNRCRKSCRLRWLNYL 57 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.8 | 6.8e-15 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ +E +ll++++k+lG++ W++Ia +++ gRt++++k++w+++l 475739 63 RGKFCSDEVDLLLRLHKLLGNR-WSLIAGRLP-GRTANDIKNYWNTHL 108 7888899***************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.917 | 1 | 61 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 6 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.56E-28 | 7 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-14 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-14 | 10 | 57 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-9 | 12 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-23 | 60 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.337 | 62 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-13 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-13 | 63 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MENSFKGLRK GTWTAEEDSL LRQCIDKYGE SKWHQVPLRA GLNRCRKSCR LRWLNYLKPS 60 IKRGKFCSDE VDLLLRLHKL LGNRWSLIAG RLPGRTANDI KNYWNTHLSK KHDELCCKTK 120 MINRNITSHP TTSAQKIDVL KPRPRSFSDK NSCNDLNVLP KVDVVPSWFG LNNNNVCERS 180 ITCNKDEQKD KLTNNLMDGD NTWWESLLEE SQEADLFGPE ATITEKGETS AFDVSKLWGL 240 FHEETVELN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-22 | 8 | 113 | 5 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 475739 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY008378 | 0.0 | AY008378.1 Arabidopsis thaliana putative transcription factor MYB113 mRNA, complete cds. | |||
GenBank | AY519566 | 0.0 | AY519566.1 Arabidopsis thaliana MYB transcription factor (At1g66370) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002887030.1 | 0.0 | transcription factor MYB113 | ||||
Swissprot | Q9FNV9 | 1e-147 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | D7KTP0 | 0.0 | D7KTP0_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.2__869__AT1G66370.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 1e-143 | myb domain protein 113 |
Link Out ? help Back to Top | |
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Phytozome | 475739 |
Entrez Gene | 9323095 |
Publications ? help Back to Top | |||
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