PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 475338 | ||||||||
Common Name | ARALYDRAFT_475338 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 666aa MW: 73819.7 Da PI: 6.1248 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.8 | 7.6e-22 | 124 | 225 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+lt sd++++g +++ +++a+++ +++ ++l+ +d+++++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +++el+v+v 475338 124 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHNNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL--RGENEELRVGV 222 99****************************964333..4459************************************************..3488889**** PP E-S CS B3 97 frk 99 +r+ 475338 223 RRH 225 996 PP | |||||||
2 | Auxin_resp | 112.3 | 4.7e-37 | 250 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t+++F+v+Y+Pr+s+seF+v+v+++++a ++k+svGmRfkm+fe+e+++e+r+sGt+vgv++ +++ W++S+WrsLk 475338 250 AAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPEKRFSGTIVGVQENKSSVWHDSEWRSLK 332 79*******************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-44 | 113 | 253 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.9E-40 | 121 | 239 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.88E-19 | 122 | 224 | No hit | No description |
SMART | SM01019 | 4.9E-21 | 124 | 226 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 124 | 226 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.1E-19 | 124 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.5E-34 | 250 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.9E-12 | 535 | 632 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 29.676 | 542 | 635 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.27E-11 | 544 | 619 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 666 aa Download sequence Send to blast |
MAATTHSSVK PGGVLSDALC TELWHACAGP LVTLPREGER VYYFPEGHME QLEASMHQGL 60 EQQMPSFNLP SKILCKVINI QRRAEPETDE VYAQITLLPE LDQNEPTSPD APVQEPEKCT 120 VHSFCKTLTA SDTSTHGGFS VLRRHADDCL PPLDMSQQPP WQELVATDLH NNEWHFRHIF 180 RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF LRGENEELRV GVRRHMRQQT NIPSSVISSH 240 SMHIGVLATA AHAITTGTIF SVFYKPRTSR SEFIVSVNRY LEAKTQKLSV GMRFKMRFEG 300 EEAPEKRFSG TIVGVQENKS SVWHDSEWRS LKVQWDEPSS VFRPERVSPW ELEPLVANST 360 PSSQPQPPQR NKRPRPPGLP SPTTGPSAPV TPDGVWKSPA DTPSSVPLFS PPAKAATFGH 420 GGNKSFGVSI GSAFWPSHAD SAAESFASAF NNESTEKKQT NGNVCRLFGF ELVENVNVDE 480 CFSAASVSGA VAVDQPVPSN EFDSGQQSEP LNINQSDIPS GSDDPENSSL RSPQESQSRQ 540 IRSCTKVHMQ GSAVGRAVDL TRSECYEDLF KKLEEMFEIK GELLKSTKKW QVVYTDDEDD 600 MMMVGDDPWN EFCGMVRKIF IYTPEEVKKL SPKNKLAVNA RMQPKTDAEE NGNTEGRSSS 660 MAGSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 1 | 359 | 1 | 359 | Auxin response factor 1 |
4ldw_A | 0.0 | 1 | 359 | 1 | 359 | Auxin response factor 1 |
4ldw_B | 0.0 | 1 | 359 | 1 | 359 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 375 | KRPRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 475338 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK317214 | 0.0 | AK317214.1 Arabidopsis thaliana AT1G59750 mRNA, complete cds, clone: RAFL22-03-B07. | |||
GenBank | ATU83245 | 0.0 | U83245.1 Arabidopsis thaliana auxin response factor 1 (ARF1) mRNA, complete cds. | |||
GenBank | BT002748 | 0.0 | BT002748.1 Arabidopsis thaliana clone C105458 auxin response factor 1 (At1g59750) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020890290.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Refseq | XP_020890291.1 | 0.0 | auxin response factor 1 isoform X1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | D7KXS0 | 0.0 | D7KXS0_ARALL; Auxin response factor | ||||
STRING | fgenesh2_kg.2__468__AT1G59750.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8825 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.3 | 0.0 | auxin response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 475338 |
Entrez Gene | 9322728 |
Publications ? help Back to Top | |||
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