PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

474894

Common Name

ARALYDRAFT_474894

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 843aa MW: 94099.6 Da PI: 6.1304

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
474894	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.5e-29	555	605	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ 474894 555 EKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 605 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.461	540	625	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	557	605	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.85E-22	734	824	No hit	No description
PROSITE profile	PS51745	19.853	742	824	IPR000270	PB1 domain
SMART	SM00666	8.4E-24	742	824	IPR000270	PB1 domain
Pfam	PF00564	1.3E-18	743	823	IPR000270	PB1 domain
CDD	cd06407	2.10E-34	743	823	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.6E-27	743	824	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MELDDLDLSG SWPLEQITFA SNFKSPLIFS SSEQPFSPLW SFSEASGDVG GELYSAAGVP 60 TRFTDYSVLL AGSESETMTK EENNQVPSPL WGIMPLENPD SYCAIKAKMT QALRYFKEST 120 GQQHVLAQVW APVKNRGRYV LTTSGQPFVL GPNSNGLNQY RMVSLTYMFS LDGERDGELG 180 LPGRVFRKRL PEWTPNVQYY SSKEFSRLGH ALHYNVQGTL ALPVFEPSRQ LCVGVVELIM 240 TSPKINYAPE VEKVCKALEA VNLKTSEILN NETTQICNEG RQNALAEILE ILTVVCETYK 300 LPLAQTWVPC RHRSVLAFGG GFQKSCSSFD GSCMGKVCMS TSDLAVYVVD AHVWGFRDAC 360 SEHHLQKGQG VAGRAFQSGN LCFCRDVTRF CKTDYPLVHY ARMFKLTSCF AVCLKSTYTG 420 DDEYVLEFFL PPAITDKSEQ DFLLGSLLQT MKQHYSSLKV VSETELCENN MSLEVVEASE 480 DGMVYSKLEP IRIHHPAPIS KDYLELNAPE QKLNLNSDLM ENNEVDDGFE RFQTLDTIPE 540 AKTVKKSERK RGKTEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR 600 KINKVNRSLT RLKHVIDSVQ GADGSLNLTS LSPRPWPHQI HPIENQLPKN CPPTSTSPLS 660 NLQDVKIENR DAEDSAGSST SRASCKVSLI CETRFQLPTH NQEPFRQTGL DDSDSSSKNI 720 TNFWTHLSCQ DTASPTTLHN KLVSIKATYR EDIIRFKISP ESVSITELKQ QVAKRLKLET 780 AAFELKYLDD DREWVSVSCD ADLSECLDTS AAKANTLRLS VHDVTFNFGS SCESSEATMM 840 CL*

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MELDDLDLSG SWPLEQITFA SNFKSPLIFS SSEQPFSPLW SFSEASGDVG GELYSAAGVP  60
TRFTDYSVLL AGSESETMTK EENNQVPSPL WGIMPLENPD SYCAIKAKMT QALRYFKEST  120
GQQHVLAQVW APVKNRGRYV LTTSGQPFVL GPNSNGLNQY RMVSLTYMFS LDGERDGELG  180
LPGRVFRKRL PEWTPNVQYY SSKEFSRLGH ALHYNVQGTL ALPVFEPSRQ LCVGVVELIM  240
TSPKINYAPE VEKVCKALEA VNLKTSEILN NETTQICNEG RQNALAEILE ILTVVCETYK  300
LPLAQTWVPC RHRSVLAFGG GFQKSCSSFD GSCMGKVCMS TSDLAVYVVD AHVWGFRDAC  360
SEHHLQKGQG VAGRAFQSGN LCFCRDVTRF CKTDYPLVHY ARMFKLTSCF AVCLKSTYTG  420
DDEYVLEFFL PPAITDKSEQ DFLLGSLLQT MKQHYSSLKV VSETELCENN MSLEVVEASE  480
DGMVYSKLEP IRIHHPAPIS KDYLELNAPE QKLNLNSDLM ENNEVDDGFE RFQTLDTIPE  540
AKTVKKSERK RGKTEKTISL EVLQQYFAGS LKDAAKSLGV CPTTMKRICR QHGISRWPSR  600
KINKVNRSLT RLKHVIDSVQ GADGSLNLTS LSPRPWPHQI HPIENQLPKN CPPTSTSPLS  660
NLQDVKIENR DAEDSAGSST SRASCKVSLI CETRFQLPTH NQEPFRQTGL DDSDSSSKNI  720
TNFWTHLSCQ DTASPTTLHN KLVSIKATYR EDIIRFKISP ESVSITELKQ QVAKRLKLET  780
AAFELKYLDD DREWVSVSCD ADLSECLDTS AAKANTLRLS VHDVTFNFGS SCESSEATMM  840
CL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	474894

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT000933	0.0	BT000933.1 Arabidopsis thaliana clone C104874 unknown protein (At1g64530) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020891098.1	0.0	protein NLP6 isoform X2
Swissprot	Q8RWY4	0.0	NLP6_ARATH; Protein NLP6
TrEMBL	D7KS88	0.0	D7KS88_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.2__24__AT1G64530.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2507	26	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	474894
Entrez Gene	9323942

Publications ? help Back to Top
Liseron-Monfils C, et al. Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs. Plant Signal Behav, 2014. [PMID:24270626] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968]