PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474883
Common NameARALYDRAFT_474883
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family Dof
Protein Properties Length: 346aa    MW: 37304.3 Da    PI: 8.1598
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474883genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-3944105263
  zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
             k++al+cprC+s ntkfCyynnysl+qPryfCk CrryWt+GG+lrn+PvGgg rknk+sss
  474883  44 KDQALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCRRYWTAGGSLRNIPVGGGVRKNKRSSS 105
             7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-333096IPR003851Zinc finger, Dof-type
PfamPF027012.7E-3345102IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.86348102IPR003851Zinc finger, Dof-type
PROSITE patternPS0136105086IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDTAKWPQEF VVKPMNEIVT NTCLKQPNHP PTATPVERKA RPEKDQALNC PRCNSLNTKF  60
CYYNNYSLTQ PRYFCKDCRR YWTAGGSLRN IPVGGGVRKN KRSSSSSPSS SSSSKKPLFA  120
RNNTPPPPLP QLNPKIGEAA ATKVQDLTFS QGFGNAHEVK DLNLAFSQGF GIAHHHHSHS  180
SIPEFLQVVP SSSMKNNTLV STSSALELLG ISTSSNSSRP AFMSYPNVHD SSVYTASGFG  240
LSYPQFQDFM RPALGFSLDG GDPLHQEEGS SGTNNGRPLL PFESLKLPVS SSSTNSGGND  300
NVKEINDHHS DHEKEEGEAD HSVGFWNGML SAGASAAASG GGSWQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00210DAPTransfer from AT1G64620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap474883
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0848980.0AY084898.1 Arabidopsis thaliana clone 120488 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002887870.10.0dof zinc finger protein DOF1.8
SwissprotQ84JQ80.0DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBLD7KS750.0D7KS75_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.2__13__AT1G64620.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149321720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64620.11e-173Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tian C, et al.
    An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation.
    Mol. Syst. Biol., 2014. 10: p. 755
    [PMID:25358340]