PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 474686 | ||||||||
Common Name | ARALYDRAFT_474686 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 199aa MW: 23050 Da PI: 6.2197 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178 | 8.8e-56 | 53 | 157 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlr+w+h+eenkrrtl+k+diaaa++rtd+fdflvdi+prde 474686 53 QLQMFWANQmqeIEHTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDE 155 89******9888899***************************************************************************************9 PP NF-YC 101 lk 102 lk 474686 156 LK 157 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.84E-36 | 31 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.6E-22 | 75 | 138 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.8E-38 | 76 | 153 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MEPSEEGQQQ QGMMDYVPPH AYQSGPVNAA SHMPFQQAHH FHHHHHQQQQ QQQLQMFWAN 60 QMQEIEHTTD FKNHTLPLAR IKKIMKADED VRMISAEAPV IFAKACEMFI LELTLRAWIH 120 TEENKRRTLQ KNDIAAAISR TDVFDFLVDI IPRDELKEEG LGVTKGAIPS VVGSPSYYYM 180 QQQGMMQHWP QEQHHDES* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-57 | 60 | 153 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 131 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 474686 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009894 | 0.0 | AC009894.2 Arabidopsis thaliana chromosome I BAC T6H22 genomic sequence, complete sequence. | |||
GenBank | AC069159 | 0.0 | AC069159.8 Arabidopsis thaliana chromosome 1 BAC F14G9 genomic sequence, complete sequence. | |||
GenBank | AY072411 | 0.0 | AY072411.1 Arabidopsis thaliana transcription factor, putative (At1g56170) mRNA, complete cds. | |||
GenBank | AY114704 | 0.0 | AY114704.1 Arabidopsis thaliana putative transcription factor (At1g56170) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870486.1 | 1e-148 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-115 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | D7KNW7 | 1e-146 | D7KNW7_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__4640__AT1G56170.2 | 1e-147 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-104 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | 474686 |
Entrez Gene | 9327940 |
Publications ? help Back to Top | |||
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