PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474200
Common NameARALYDRAFT_474200
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family RAV
Protein Properties Length: 338aa    MW: 38489.4 Da    PI: 7.1509
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474200genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.11.4e-102773254
     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
            +ykGV +   +g W A+I+       +kr++lg+f +a eAa a++ a  kl+
  474200 27 KYKGVVQQQ-NGHWGAQIYAD-----HKRIWLGTFKSAAEAATAYDSASIKLR 73
            8****9888.8******9993.....4*********************99997 PP
2B391.75.5e-29157256185
             EEEE-..-HHHHTT-EE--HHH.HTT................---....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh................ggkke..esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
             f+k+ltpsdv+k++rlv+pkk+a ++                g      e+++++++d+  r+W+++++y+k+s+++v+t+GW++Fvk+++Lke+D++vF+  
  474200 157 FQKELTPSDVGKLNRLVIPKKYAVKYmpfisddqsekedgeiG---GsvEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIVFYTC 256
             99*****************************997766666653...044899************************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-162790IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-142786IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-162784IPR001471AP2/ERF domain
PROSITE profilePS5103217.2932784IPR001471AP2/ERF domain
CDDcd000188.71E-232786No hitNo description
Gene3DG3DSA:2.40.330.101.4E-32152255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-27155256IPR015300DNA-binding pseudobarrel domain
CDDcd100173.94E-26156254No hitNo description
SMARTSM010194.5E-23157268IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266157279IPR003340B3 DNA binding domain
PfamPF023622.5E-26157257IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MRLNDEPENA LVVSSATKTV VVSGNVKYKG VVQQQNGHWG AQIYADHKRI WLGTFKSAAE  60
AATAYDSASI KLRSFDANSH RNFPWSNITV HEPDFQDCYT TETVLNMIRD GSYPHKFRDF  120
LRVRSQIVAS MNIGGTKQVR GEVNQESDKC FSCTQLFQKE LTPSDVGKLN RLVIPKKYAV  180
KYMPFISDDQ SEKEDGEIGG SVEDVEVVFY DRAMRQWKFR YCYWKSSQSF VFTRGWNSFV  240
KEKNLKEKDV IVFYTCDVPN NVKTLEGQSK TFLMIDVHYF SDNGTVVAEE VSMTVHDSSE  300
EGMKTENFVS SKSKDKETKT EENKGGFMLF GVRIQCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-2515625313100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap474200
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002894269.20.0AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6P50.0RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLD7KGR60.0D7KGR6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__4154__AT1G50680.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17052788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.10.0RAV family protein