PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 474196
Common NameARALYDRAFT_474196
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 225aa    MW: 25053.8 Da    PI: 9.3176
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
474196genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-192676155
     AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
            ++++GVr ++ +gr++AeIrd ++    ++r++lg+f++a eAa+a++ a+++l+g
  474196 26 TRFRGVRKRP-WGRFAAEIRDpWK----KARVWLGTFDSAVEAARAYDSAARNLRG 76
            589*******.**********883....5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.19E-292686No hitNo description
PfamPF008472.7E-122676IPR001471AP2/ERF domain
SMARTSM003802.5E-342790IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-302784IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-212786IPR016177DNA-binding domain
PROSITE profilePS5103222.552784IPR001471AP2/ERF domain
PRINTSPR003671.9E-92839IPR001471AP2/ERF domain
PRINTSPR003671.9E-95066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MRRGRGSSAV AGPTAVAAIN GSVKETRFRG VRKRPWGRFA AEIRDPWKKA RVWLGTFDSA  60
VEAARAYDSA ARNLRGPKAK TNFPIDCSSP SPQQRFNQIQ NQNQNQVDPF MDHRLYADHQ  120
QQFPIVNRPT SSSMSSTVES FSGPRPTTMK PATTKRYPRT PPVVPEDCHS DCDSSSSVIV  180
DDDDIASSSR RRNPPFQFDL NFPPLDDVDL FNGSDDLHCT DLRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-191291479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00194DAPTransfer from AT1G50640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap474196
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0081050.0AB008105.1 Arabidopsis thaliana AtERF-3 mRNA for ethylene responsive element binding factor 3, complete cds.
GenBankAC0125610.0AC012561.2 Arabidopsis thaliana chromosome I BAC F11F12 genomic sequence, complete sequence.
GenBankAC0792790.0AC079279.4 Arabidopsis thaliana chromosome 1 BAC F17J6 genomic sequence, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869093.11e-134ethylene-responsive transcription factor 3
SwissprotO803391e-116ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLD7KGQ91e-163D7KGQ9_ARALL; ATERF3/ERF3
STRINGfgenesh2_kg.1__4150__AT1G50640.11e-164(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.11e-107ethylene responsive element binding factor 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]