PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 473278 | ||||||||
Common Name | ARALYDRAFT_473278 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NF-YA | ||||||||
Protein Properties | Length: 191aa MW: 21400.8 Da PI: 8.9003 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 106.3 | 2.6e-33 | 99 | 155 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Ra+le+++k+ +ksrkpylheSRh hA+rRpRg+gGrF 473278 99 EEPVFVNAKQYHGILRRRQSRARLESQNKV-IKSRKPYLHESRHLHAIRRPRGCGGRF 155 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.8E-37 | 97 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 38.39 | 98 | 158 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 2.3E-27 | 100 | 155 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.2E-24 | 101 | 123 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 7.2E-24 | 132 | 155 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MTSSIHELSD NVGSHEKQEQ IDSHFQPPIP PGRNYESIAT SLVYSEPVPQ KLKAPGQYPY 60 PDPYYRSIFA PPPQPYTGVH LQLMGIQQQG VPLPSDAVEE PVFVNAKQYH GILRRRQSRA 120 RLESQNKVIK SRKPYLHESR HLHAIRRPRG CGGRFLNAKK DDEHHEDSTH EENSNLSSDK 180 SAMAASSGTS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-22 | 98 | 167 | 1 | 71 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 473278 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT004274 | 0.0 | BT004274.1 Arabidopsis thaliana clone RAFL15-46-O22 (R50095) putative transcription factor (At1g30500) mRNA, complete cds. | |||
GenBank | BT005561 | 0.0 | BT005561.1 Arabidopsis thaliana clone U50095 putative transcription factor (At1g30500) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867054.1 | 1e-133 | nuclear transcription factor Y subunit A-7 | ||||
Refseq | XP_020867055.1 | 1e-133 | nuclear transcription factor Y subunit A-7 | ||||
Refseq | XP_020867056.1 | 1e-133 | nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q84JP1 | 1e-126 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | D7KFK5 | 1e-137 | D7KFK5_ARALL; CCAAT-binding transcription factor (CBF-B/NF-YA) family protein | ||||
STRING | fgenesh2_kg.1__3232__AT1G30500.2 | 1e-138 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4168 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 1e-118 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | 473278 |
Entrez Gene | 9329689 |
Publications ? help Back to Top | |||
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