PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 473061
Common NameARALYDRAFT_473061
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family HB-other
Protein Properties Length: 1706aa    MW: 191783 Da    PI: 5.1093
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
473061genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-184297257
              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
               kR+  t+ qle+Le+++ ++ yps+++r++L++kl+L++rq ++WF+ rR k+kk
    473061 42 PKRQMKTPFQLETLEKVYSEETYPSEATRADLSEKLDLSDRQLQMWFCHRRLKDKK 97
              69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-172897IPR009057Homeodomain-like
SuperFamilySSF466897.7E-163398IPR009057Homeodomain-like
PROSITE profilePS5007116.2283898IPR001356Homeobox domain
SMARTSM003891.0E-1640102IPR001356Homeobox domain
PfamPF000463.2E-164297IPR001356Homeobox domain
CDDcd000861.04E-134397No hitNo description
PROSITE profilePS5082717.628550609IPR018501DDT domain
SMARTSM005714.7E-24550609IPR018501DDT domain
PfamPF027913.1E-17551606IPR018501DDT domain
PfamPF050669.0E-16732799IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.4E-6934973IPR028942WHIM1 domain
PfamPF156139.7E-1311071179IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1706 aa     Download sequence    Send to blast
MEMGSDGEED QIRSVGDVGG NHLHKKKKID NSSSKDGGRV KPKRQMKTPF QLETLEKVYS  60
EETYPSEATR ADLSEKLDLS DRQLQMWFCH RRLKDKKDGQ SKKPAKSAVQ SSALASSVHE  120
LPPAGSVPEQ DSRSDSGSES GCSPYSNSRR NFASGSSSSR AELDEYDTMG KASYESRLST  180
MVRRAIVCIE AQLGEPLRDD GPILGMEFDP LPPGAFGTPI GMQKHLVHPY ESNVYERYDA  240
RPQRSHAVAR SFHEQQSLDD PSSYTPEIYG RYSENHARGM DYEIARSRSS SFMHANGPLP  300
RSYVTPGHAS RNCSTSQQAM PIPIESAHRG DRFLLEKDSS VLGTEDPYLL PDGVRKSNDV  360
HRKGKINDDR LGRGSEIREN HGPKDLEKLE IQRKKNEERM RKEMEKNERE RRKEEERLMR  420
ERIKEEERLQ REQRREIERR EKFLQRENER AEKKKQKDEI RREKDAIRRK LAIEKATARR  480
IAKESMDLIE DEQLELMELA AISKGLPSVL QLDHDTLQNL EVYRDSLSTF PPKSLQLKMP  540
FAISPWKDSD ETVGNLLMVW RFLISFSDVL DLWPFTLDEF IQAFHDYDSR LLGEIHVTLL  600
RSIIRDIEDV ARTPFSGIGN NQYTTANPEG GHPQIVEGAY AWGFDIRSWK KHLNPLTWPE  660
ILRQLALSAG FGPRLKKKHS RLTNTGDKDE AKGCEDIIST IRNGSAAESA FASMREKGLL  720
APRKSRHRLT PGTVKFAAFH VLSLEGSKGL TVLELADKIQ KSGLRDLTTS KTPEASISVA  780
LTRDVKLFER IAPSTYCVRA PYVKDPADGE AILADARKKI RAFENGFTGP EDVNDLERDE  840
EFEIDIDEDP EVDDLASLAS ASKSAVLGEA NVLSGKGGDT MFCDVKADVK SELEKEFPSP  900
PPSSMKSIVP QHSERFKDTV VGCVDNVVDE SNQGQSWIQG LTEGDYCHLS VEERLNALVA  960
LVGIANEGNS IRAGLEDRME AANSLKKQMW AEAQLDNSCM RDVLKLDFQN LASSKTESTM  1020
GLPIIQSSTR ERDSFDRDPS QLLDETKPLD DLSNNLHKSS AERALINQDA NISQENCSSQ  1080
LGYASKRSRS QLKSYIGHKA EEVYPYRSLP LGQDRRHNRY WHFAVSVSKS DPCSGLLFVE  1140
LHDGKWLLID SEEAFDVLVA SLDMRGIRES HLRIMLQKIE GSFKENACKN IKLDRNPFLK  1200
EKSIVNHSPT DSVSPSSAIS GSNSDSMETS TSIRVELGRN DTENKNLSKR FHDFQRWMWT  1260
ETYSSLPSCA RKYGKKRSEL LATCDACVAS YLSEYTHCTS CHQRLDVVDS SEILDSGLTV  1320
SPLPFGVRLL KPLLVFLEAS VPDEALESFW TEDKRKIWGF RLNASSSPED LLQVLTSLES  1380
AIKKESLSSN FMSAKELLGA ANADVDDPGS VDILPWIPKT VSAVALRLSE LDASIIYVKP  1440
EKPELIPEDE NEQISLFPGD SPFKGKGPKE QGDQDEVVPN SGNRRNKRAR VSLGSGSNRK  1500
VKRKKAQSGL NKFVVGRRNV AVNSNLMTVE LNHQVPGKGK RTVRKRPERI DEDNDHLVNR  1560
MANIVRPKSE EVEEDEEEEE QTFRDIDEDW AAGETPREID EDWANETPNR MMTPMQVDDE  1620
SDNSVGVESE DDDGGGQFVD YSQRNKWGLD WNSNPNEAME EEVVGVGRVE GEDDAEMSES  1680
SEDDDANNAA NNYDRESEGY SSSDS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13745GRVKPKRQM
29097RRLKDKKD
314971504NRKVKRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap473061
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0101550.0AC010155.3 Genomic sequence for Arabidopsis thaliana BAC F3M18 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866525.10.0homeobox-DDT domain protein RLT1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLD7KCW80.0D7KCW8_ARALL; HB-1
STRINGfgenesh2_kg.1__3015__AT1G28420.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83472236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1