PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472970
Common NameARALYDRAFT_472970
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 450aa    MW: 49344.7 Da    PI: 6.5505
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472970genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.18.4e-053303681255
             HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  472970 330 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 368
             7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.827318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-5328372No hitNo description
SuperFamilySSF474596.54E-11328381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-8332375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDSANLHQLQ DQLQLVGSSS SSSSLDNNSD PSCYGASSAH QWSPGGISLN SVSLSHNYNN  60
EMLNTRDHNN NTSECMSLST IHNHSLIQQQ DFPLQWPHDQ SSYHHHEGLL KIKEELSSSA  120
ISDHQEGISK FTDMLNSPVI TNYLKINEHK DYTEKLLLKS MSSGFPISGD YCSSLPSSSS  180
SSSPSSQSHR GNFSQIYPSV NISSLSESRK MSMDDMSNIP RPFDMNMQVF DGRLFEGNVL  240
VPPLNSQEIS NLGMSRGSFP PFGLPFHHHL QQTLPHPSSS PTHQMEMFSN ESQTSEGKRH  300
NFLMATKVGE NASKKPRVES RSSCPPFKVR KEKLGDRIAA LQQLVSPFGK TDTASVLMEA  360
IGYIKFLQSQ IETLSVPYMR ASRNRTGKAS QLGSQSQEGD EEETRDLRSR GLCLVPLSCM  420
TYVTGDGGDG GDGVGSGFWP TPPGFGGRT*
Cis-element ? help Back to Top
SourceLink
PlantRegMap472970
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0123750.0AC012375.3 Genomic sequence for Arabidopsis thaliana BAC T22C5 from chromosome I, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870503.10.0transcription factor bHLH110
SwissprotQ9SFZ30.0BH110_ARATH; Transcription factor bHLH110
TrEMBLD7KBT30.0D7KBT3_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2924__AT1G27660.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]