PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472884
Common NameARALYDRAFT_472884
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 209aa    MW: 23094.4 Da    PI: 6.7395
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472884genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000215981123
             EEETTTTEEESSHHHHHHHHHHT CS
  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
             ++C++C + F ++  L  H++ H
   472884 59 FSCNYCRRKFYSSQALGGHQNAH 81
             89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.18E-65687No hitNo description
PROSITE profilePS5015711.3855986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MPESDDASRE TPPSREGEAS SNQDLSKPES NPVSLDLKLN DSFNDETKST KCEANPRVFS  60
CNYCRRKFYS SQALGGHQNA HKRERTMAKR AMHMGRMFGH HHRPYTYTSS SLGMQAHSGL  120
LHHTLSQPQP LVSRFHHQGY FGNTVPLFFD SDDGGSDFFW PGSFRQVVEE AEAPVVVAVT  180
EPGLDLNSVA ANGGVDNNNS KPDLTLRL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap472884
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0001030.0AC000103.2 Genomic sequence for Arabidopsis thaliana BAC F21J9 from chromosome I, complete sequence.
GenBankAC0041330.0AC004133.3 Genomic sequence for Arabidopsis thaliana BAC F5A9 from chromosome I, complete sequence.
GenBankAK1190180.0AK119018.1 Arabidopsis thaliana At1g24630 mRNA for putative zinc finger protein ZFP7, complete cds, clone: RAFL21-34-I16.
GenBankATHZFPG0.0L39650.1 Arabidopsis thaliana zinc finger protein (ZFP7) mRNA, complete cds.
GenBankBT0056290.0BT005629.1 Arabidopsis thaliana clone U51263 putative zinc finger protein 7, ZFP7 (At1g24625) mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870299.11e-156zinc finger protein 7
RefseqXP_020870300.11e-156zinc finger protein 7
RefseqXP_020870301.11e-156zinc finger protein 7
RefseqXP_020870302.11e-156zinc finger protein 7
SwissprotQ392661e-146ZFP7_ARATH; Zinc finger protein 7
TrEMBLD7KAK81e-154D7KAK8_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2838__AT1G24625.11e-155(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139991725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-114zinc finger protein 7
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Joseph MP, et al.
    The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development.
    Plant Physiol., 2014. 165(3): p. 1203-1220
    [PMID:24808098]
  3. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]