PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472840
Common NameARALYDRAFT_472840
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 796aa    MW: 91276.8 Da    PI: 6.6138
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472840genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.00036140206541
             HHHHHHHHHHHHHHHHHHHHCTSCC.C................................TTS-STCH CS
     HLH   5 hnerErrRRdriNsafeeLrellPk.as.............................kapskKlsKa 41 
             + + E+r+R ++ + +   r++lP+ ++                             k++++K++K+
  472840 140 KTILEQRYRTNVGELLGHVRKILPWaDPkivkklidekmyellgektaadnekptkkKEKKEKPTKV 206
             6899*********************666899999999999988888876666666666666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045583.7E-569167IPR007639Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain, N-terminal
PfamPF045573.3E-12170263IPR007638Glutaminyl-tRNA synthetase, class Ib, non-specific RNA-binding domain 2
CDDcd008074.69E-143270580No hitNo description
PfamPF007494.4E-116270575IPR020058Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
SuperFamilySSF523743.66E-85270584No hitNo description
Gene3DG3DSA:3.40.50.6203.3E-37270339IPR014729Rossmann-like alpha/beta/alpha sandwich fold
TIGRFAMsTIGR004403.2E-190271792IPR004514Glutamine-tRNA synthetase
PRINTSPR009873.3E-6274286IPR000924Glutamyl/glutaminyl-tRNA synthetase
PROSITE patternPS001780277288IPR001412Aminoacyl-tRNA synthetase, class I, conserved site
PRINTSPR009873.3E-6303316IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.90.800.101.1E-42343447No hitNo description
PRINTSPR009873.3E-6448458IPR000924Glutamyl/glutaminyl-tRNA synthetase
Gene3DG3DSA:3.40.50.6203.3E-37450499IPR014729Rossmann-like alpha/beta/alpha sandwich fold
Gene3DG3DSA:1.10.1160.104.6E-31500577IPR020061Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain
SuperFamilySSF507152.41E-58578789IPR011035Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain
PfamPF039504.7E-43578770IPR020059Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain
Gene3DG3DSA:2.40.240.106.9E-31586696IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene3DG3DSA:2.40.240.107.7E-30697788IPR020056Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006425Biological Processglutaminyl-tRNA aminoacylation
GO:0048481Biological Processplant ovule development
GO:0005737Cellular Componentcytoplasm
GO:0004819Molecular Functionglutamine-tRNA ligase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MVLKDDNSEK SIELFLSIGL DEKTARNTIN NNKVTANLTA VIHEAAVTDG CDRNTGNLLY  60
SVATKYPANA LVHRPTLLKY IVTSKIKTPA QLEAAFAFFA NTSSEDFKLN EFEEACGVGI  120
EVSPEDIEKA VKGIFEDNKK TILEQRYRTN VGELLGHVRK ILPWADPKIV KKLIDEKMYE  180
LLGEKTAADN EKPTKKKEKK EKPTKVEEKK AVVETTAEPS EEELNPYTIF PQPEQNFMVH  240
TEVFFSDGSI LRCSNTKEVL DKHLKVTGGK VYTRFPPEPN GYLHIGHAKA MFVDFGLAKE  300
RGGCCYLRYD DTNPEAEKEE YINHIEEIVS WMGWEPFKIT YTSDYFQELY DLAVELIRRG  360
RAYVDHQTGD EIKEYREKKM NSPWRDRPIE ESLKLFDEMR RGMIEEGKAT LRMKQDMQSD  420
NFNMYDLIAY RIKFAPHPKA GDKWCIYPSY DYAHCTVDSL ENITHSLCTL EFETRRAPYY  480
WLLHSLSLYM PYVWEYSRLN VTNTVMSKRK LNYIVTNKYV DGWDDPRLLT LSGLRRRGVT  540
STAINAFVRG IGITRSDGSM IHVSRLEHHI REELNKTAPR TMVVLNPLKV VITNLESDKV  600
IELDAKRWPD AQNDDPSAFY KVPFSRVVYI DQSDFRMKDS KDYYGLAPGK SILLRYAFPI  660
KCTNVVFADD NETVREIHAE YDPEKKSKPK GVLHWVAESS PGKEPIKVEV RLFEKLFNSE  720
NPAELNNDWL TDINPNSKVV ISGAYAVSTL KDAAVGDRFQ FERLGYYAVD KDSEPGKLVF  780
NRTVTLRDSY GKGGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4r3z_C0.01179230798Glutamine--tRNA ligase
4ye6_A0.0117927775Glutamine--tRNA ligase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap472840
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0625940.0AY062594.1 Arabidopsis thaliana Unknown protein (F4F7.3) mRNA, complete cds.
GenBankAY1146530.0AY114653.1 Arabidopsis thaliana unknown protein (At1g25350) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867902.10.0glutamine--tRNA ligase, cytoplasmic
SwissprotQ8W4F30.0SYQ_ARATH; Glutamine--tRNA ligase, cytoplasmic
TrEMBLD7KAJ60.0D7KAJ6_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2794__AT1G25350.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM425234
Publications ? help Back to Top
  1. Duchêne AM, et al.
    Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.
    Proc. Natl. Acad. Sci. U.S.A., 2005. 102(45): p. 16484-9
    [PMID:16251277]
  2. Berg M,Rogers R,Muralla R,Meinke D
    Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
    Plant J., 2005. 44(5): p. 866-78
    [PMID:16297076]