PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472829
Common NameARALYDRAFT_472829
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family CO-like
Protein Properties Length: 420aa    MW: 46970.7 Da    PI: 5.3136
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472829genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.31.6e-081356340
  zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
              +r C+ + + +++++C  ++ +lC++C +  H+       H++v
    472829 13 ARACDSCVKRRARWYCAADDAFLCQSCDSLVHSAnplarrHERV 56
              578*****************************657888888876 PP
2CCT68.12.4e-23360403144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  472829 360 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 403
             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.0E-101158IPR000315B-box-type zinc finger
PROSITE profilePS5011910.8081158IPR000315B-box-type zinc finger
PfamPF006433.5E-71356IPR000315B-box-type zinc finger
CDDcd000214.28E-101458No hitNo description
PROSITE profilePS5101716.083360402IPR010402CCT domain
PfamPF062037.0E-18360402IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MKSLANAVGA KTARACDSCV KRRARWYCAA DDAFLCQSCD SLVHSANPLA RRHERVRLKT  60
ASPAVVKHSN HSSSSPPHEA ATWHHGFTRK ARTPRGSGKK NNSSIFHDLV PEISVEDQTD  120
SYELEEQLIC QVPVLDPLVA EQFLNDVVEP KIEFPMMRSG VMIEEEEDNA ESCLNGFFPT  180
DMELEEFAAD VETLLGRGLD SESYPMEELG LSNSEMFKLE KDEIEEEVEE RKAMNMEIFD  240
DDRRDGDGTV PFELSFDYES SHKTSKEEVM KNVESSGECV VKVKEEEQKN VLLLRLNYDS  300
VISTWGGQGP PWSSGVPPER DMDISGWPAV SMGENGGECT HKKQYVGGCL PSSGFGDGGR  360
EARVSRYREK RRTRLFSKKI RYEVRKLNAE KRPRMKGRFV KRASLAASAA AISPLGVNY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370386RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap472829
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2264360.0AK226436.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL06-11-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868537.10.0zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD00.0COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLD7KAI50.0D7KAI5_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2783__AT1G25440.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.10.0B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]