PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472791
Common NameARALYDRAFT_472791
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 348aa    MW: 38488 Da    PI: 6.3524
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472791genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.94.1e-09177225355
             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  472791 177 NSHSLAERVRREKISERMKFLQDLVPGC----DKVTGKAVMLDEIINYVQSLQ 225
             58*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16172242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-10172229No hitNo description
PROSITE profilePS5088815.497174224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16175238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-6177225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-9180230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDEFAAKKKD LVNTPVDLYP PENPMSGPSQ MMDSFRETLW NDGGFNVHTD AGTSFRESAG  60
LFLQDTMIPS GSKLDNGSLK DASKLVKDRS INVSEDSQSS GCNGHDDAKC GVTSSKGFNS  120
KKRKRIGKDC EGEEDKMQKD EQSSNSNVNK TNSEKQASDS LKDGYIHMRA RRGQATNSHS  180
LAERVRREKI SERMKFLQDL VPGCDKVTGK AVMLDEIINY VQSLQCQIEF LSMKLSAVNP  240
VLDFNLESLL AKDALQSSAP TFPQNMSMLY PPLSYLSQTG FMEPNRSSMS LLNGGLKRQE  300
THGYESDHHN VVHMNHETGT APDHEDATGE SKSPILSYCC NQILKNR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap472791
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304830.0AJ630483.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At1g26260.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867483.10.0transcription factor bHLH76
SwissprotQ9C6700.0BH076_ARATH; Transcription factor bHLH76
TrEMBLD7KQS20.0D7KQS2_ARALL; DNA binding protein
STRINGfgenesh2_kg.1__2745__AT1G26260.30.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM166891012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.30.0cryptochrome-interacting basic-helix-loop-helix 5
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]