PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 472748 | ||||||||
Common Name | ARALYDRAFT_472748 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 50539.7 Da PI: 9.5095 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.1 | 0.00059 | 94 | 114 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C Cgk F ++ L H+ +H 472748 94 CRECGKGFVSSKALCGHMASH 114 99*****************99 PP | |||||||
2 | zf-C2H2 | 11.8 | 0.00074 | 396 | 418 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F++ L H r+H 472748 396 HECPICFRVFKSGQALGGHKRSH 418 79******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 4.5E-5 | 5 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.0E-6 | 5 | 35 | No hit | No description |
Pfam | PF13912 | 1.1E-5 | 9 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.094 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.554 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.068 | 92 | 114 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 8.5E-4 | 93 | 116 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.87E-7 | 93 | 114 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 93 | 114 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.87E-7 | 391 | 418 | No hit | No description |
Pfam | PF13912 | 3.8E-10 | 396 | 418 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.14 | 396 | 418 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.974 | 396 | 418 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 398 | 418 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MEQLKERRFV CKFCSKRFPC GKSLGGHIRT HMNENSADSD EDEANKLKMI DENGGQSSYG 60 LRENPKKNKR FVDHRQMMAL KQQQQQQLQQ LLCCRECGKG FVSSKALCGH MASHSEREKI 120 VMDSQSDTEA SSSPIRRRSK RVVVKHHHKD AFVVGGNGIM NQSISASSDA SEIEPEQEEM 180 ARSLMMLSRD SSFKKEHNSL AESSDNNSVI LETKSSSGEQ LKMFNVKNVE EYCKKNKLVV 240 DNQMKAGEDN GDVLYDSDNS DSGYFRNGPK KLDSDVSVDG FFRNKAVMGS GSGFNSSPTK 300 QNMNMNRFKK EWYKEGGSGS GSGRSSTKYD LRNSKRGFPS YGRKKIKYEF TESVYDSGEH 360 SLETDSCADT NRTIKIHSKS AMVNKASGAK KKNKGHECPI CFRVFKSGQA LGGHKRSHFI 420 GNQEHRTLVI QHQVSHEMHT LIDLNLPAPI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 472748 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493480 | 0.0 | AB493480.1 Arabidopsis thaliana At1g26610 mRNA for hypothetical protein, partial cds, clone: RAAt1g26610. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | T1K7 | 0.0 | AC013427.3 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867941.1 | 0.0 | uncharacterized protein LOC9326714 | ||||
TrEMBL | D7KQN7 | 0.0 | D7KQN7_ARALL; Zinc finger family protein (Fragment) | ||||
STRING | fgenesh2_kg.1__2702__AT1G26610.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1900 | 21 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 0.0 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 472748 |
Entrez Gene | 9326714 |