PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472599
Common NameARALYDRAFT_472599
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TALE
Protein Properties Length: 330aa    MW: 37150.8 Da    PI: 4.6695
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472599genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.79.6e-092723062155
               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
               k +yp++ ++  LA+ +gL+++q+ +WF N+R ++
    472599 272 KWPYPTEGDKIALADATGLDQKQINNWFINQRKRH 306
               669*****************************885 PP

2ELK30.11.1e-10226247122
     ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
             +LK++LlrK++++++sLk EFs
  472599 226 DLKDRLLRKFGSRISSLKLEFS 247
             69*******************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.2E-2083129IPR005540KNOX1
PfamPF037902.5E-1985128IPR005540KNOX1
SMARTSM012563.3E-25136187IPR005541KNOX2
PfamPF037917.2E-24140186IPR005541KNOX2
PROSITE profilePS512139.83226246IPR005539ELK domain
SMARTSM011886.3E-5226247IPR005539ELK domain
PfamPF037892.6E-7226247IPR005539ELK domain
PROSITE profilePS5007112.341246309IPR001356Homeobox domain
SuperFamilySSF466892.44E-19247322IPR009057Homeodomain-like
SMARTSM003891.9E-12248313IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-27251310IPR009057Homeodomain-like
CDDcd000861.04E-11255310No hitNo description
PfamPF059204.8E-17266305IPR008422Homeobox KN domain
PROSITE patternPS000270284307IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENHVSDVFG SDELLSAAAS  60
ALSSEAASIA PEIRRNDDNV SLSVIKTKIA CHPSYPRLLQ AYIDCQKKQV GAPPEIACLL  120
EEIQRESDVY KQEVVPSYCF GADPELDEFM ETYCDILVKY KSDLARPFDE ATCFLNKIEM  180
QLRNLCTGVE SARGVSEDGA ISSDEELSGG DHELAEDGKQ RCEDRDLKDR LLRKFGSRIS  240
SLKLEFSKKK KKGKLPREAR QALLDWWNLH YKWPYPTEGD KIALADATGL DQKQINNWFI  300
NQRKRHWKPS ENMPFAMMDD SSGSFFTEE*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap472599
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723620.0AB072362.1 Arabidopsis thaliana KNAT6L mRNA for homeodomain transcription factor KNAT6, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_173752.30.0homeobox protein knotted-1-like 6
SwissprotQ84JS60.0KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLD7KNF20.0D7KNF2_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__2553__AT1G23380.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8352785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.20.0KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]