PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

472297

Common Name

ARALYDRAFT_472297

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 843aa MW: 94059.7 Da PI: 5.1978

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
472297	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.9	4.9e-29	555	605	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ 472297 555 DKTITLDVLRQYFAGSLKDAAKNIGVCPTTLKRICRQHGIQRWPSRKIKKV 605 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	539	625	IPR003035	RWP-RK domain
Pfam	PF02042	3.3E-25	557	605	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.1E-22	733	830	No hit	No description
SMART	SM00666	4.9E-26	742	825	IPR000270	PB1 domain
PROSITE profile	PS51745	29.403	742	825	IPR000270	PB1 domain
CDD	cd06407	8.90E-43	743	823	No hit	No description
Gene3D	G3DSA:3.10.20.240	7.1E-21	743	822	No hit	No description
Pfam	PF00564	8.1E-20	743	824	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MEDSFLQSEN AVMDADFMDG LLLDGCWLET TDGSEFLNIA PSTSSVSPFD PSSFMWSPTQ 60 DTSALCTSGV VSQMYGQDCV ERSSLDEFQW NKRWWIGPGG GGSSVTERLV QAVEYIKDYT 120 TERGSLIQLW VPVNRGGKRV LTTKEQPFSH DPLCQRLANY REISVKYQFS AEQDDSKALT 180 GLPGRVFLGK LPEWTPDVRF FKSEEYPRVH HAQDCGVRGT LAIPVFEQGS KICLGVIEVV 240 MTTEMVKLRP ELESICRALQ AVDLRSTELP IPPTLKGCDL SYQAALPEIR NLLRCACETH 300 KLPLAQTWVS CQQQNKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ 360 GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGA VAIRLRCIHT GPADFVLEFF 420 LPKECDDLEE QRTMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL 480 HGNSPWNASL EEIQRSNNTS NPQNLGLVFD GGEPHDGFGL KRGFDYTMDS NVNESSTFSS 540 GGFSMMAEKK RTKADKTITL DVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGIQRWPSR 600 KIKKVGHSLQ KIQRVIDSVQ GVSGPLPIGS FYANFPNLVS QSQEPSQAKT SPPPPPPVQL 660 AKSPVSSYSH SSNSSQCCSS ETQLNSGATT DPPSTDVVGS LKKTSSEIEL QSSSLDETIL 720 TLSSLENIPQ GTNLLSSQDD DFLRIKVSYG EEKIRLRMRN SRRLTDLLWE IGKRFSIEDM 780 SRYDLKYLDE DNEWVLLTCD EDVEECVDVC RTTPSHTIKL LLQVSSHHFP ERSSATEYSL 840 WH*

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MEDSFLQSEN AVMDADFMDG LLLDGCWLET TDGSEFLNIA PSTSSVSPFD PSSFMWSPTQ  60
DTSALCTSGV VSQMYGQDCV ERSSLDEFQW NKRWWIGPGG GGSSVTERLV QAVEYIKDYT  120
TERGSLIQLW VPVNRGGKRV LTTKEQPFSH DPLCQRLANY REISVKYQFS AEQDDSKALT  180
GLPGRVFLGK LPEWTPDVRF FKSEEYPRVH HAQDCGVRGT LAIPVFEQGS KICLGVIEVV  240
MTTEMVKLRP ELESICRALQ AVDLRSTELP IPPTLKGCDL SYQAALPEIR NLLRCACETH  300
KLPLAQTWVS CQQQNKSGCR HNDENYIHCV STIDDACYVG DPTVREFHEA CSEHHLLKGQ  360
GVAGQAFLTN GPCFSSDVSN YKKSEYPLSH HANMYGLHGA VAIRLRCIHT GPADFVLEFF  420
LPKECDDLEE QRTMLNALST IMAHVPRSLR TVTDKELEEE SEVIEREEIV TPKIENASEL  480
HGNSPWNASL EEIQRSNNTS NPQNLGLVFD GGEPHDGFGL KRGFDYTMDS NVNESSTFSS  540
GGFSMMAEKK RTKADKTITL DVLRQYFAGS LKDAAKNIGV CPTTLKRICR QHGIQRWPSR  600
KIKKVGHSLQ KIQRVIDSVQ GVSGPLPIGS FYANFPNLVS QSQEPSQAKT SPPPPPPVQL  660
AKSPVSSYSH SSNSSQCCSS ETQLNSGATT DPPSTDVVGS LKKTSSEIEL QSSSLDETIL  720
TLSSLENIPQ GTNLLSSQDD DFLRIKVSYG EEKIRLRMRN SRRLTDLLWE IGKRFSIEDM  780
SRYDLKYLDE DNEWVLLTCD EDVEECVDVC RTTPSHTIKL LLQVSSHHFP ERSSATEYSL  840
WH*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	472297

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY091015	0.0	AY091015.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.
GenBank	AY117237	0.0	AY117237.1 Arabidopsis thaliana putative nodule inception protein (At1g20640) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020866685.1	0.0	protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	D7KJ39	0.0	D7KJ39_ARALL; RWP-RK domain-containing protein
STRING	fgenesh2_kg.1__2251__AT1G20640.2	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	472297
Entrez Gene	9326458