PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 472211
Common NameARALYDRAFT_472211
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 412aa    MW: 45079 Da    PI: 5.0995
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
472211genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06358380426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              ++C++f  t  C++G++C + H+
   472211 358 KPCMYFNSTRGCRHGANCLYQHD 380
              69********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.098354382IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4358380IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4358380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.22E-5359391IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG  60
PLSANQSQIK LSDIPVIKWK SSVRILLDEE WRVVAGDESK EVEVQNQREL RVLEAFYPGA  120
SSIPPNPSVP ADVENHHDDQ QTIVIPILPV EDDDIAMDSA SDFPTQSGVD VGTDPSITDE  180
NTSTSSILPA GPEIMAALSA ISNSKEQGSS MIDQDLLIKI LSNPKLVENL VANSGSAGSV  240
SSNAGSLYPS STHEANGVVT TAPTYSNGQF YPQPSITHIP PMAYTPLDQP NYGAPPARDA  300
SYYKNLIQQH GGDRQEMPPV QQHLGYRYNL QPGGPNPEMV NSNNNNQRPR DSKPKIMKPC  360
MYFNSTRGCR HGANCLYQHD VTTPYQPRNL NNGNINTSEM QNAKRMRFDR D*
Cis-element ? help Back to Top
SourceLink
PlantRegMap472211
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2215790.0AK221579.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-83-G10.
GenBankBT0255570.0BT025557.1 Arabidopsis thaliana At1g19860 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020866996.10.0zinc finger CCCH domain-containing protein 6 isoform X2
SwissprotQ56XU40.0C3H6_ARATH; Zinc finger CCCH domain-containing protein 6
TrEMBLD7KI690.0D7KI69_ARALL; Zinc finger (CCCH-type) family protein
STRINGfgenesh2_kg.1__2165__AT1G19860.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56141418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.23e-06HB-other family protein
Publications ? help Back to Top
  1. Mastrangelo AM, et al.
    Low temperature promotes intron retention in two e-cor genes of durum wheat.
    Planta, 2005. 221(5): p. 705-15
    [PMID:15666155]