PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 472196 | ||||||||
Common Name | ARALYDRAFT_472196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TALE | ||||||||
Protein Properties | Length: 532aa MW: 60044.6 Da PI: 6.2109 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.7 | 5.4e-10 | 366 | 403 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+++e+ LAk++gL+++qV +WF N R + 472196 366 FEHflHPYPKESEKIMLAKQTGLSKNQVANWFINARVR 403 664459******************************88 PP | |||||||
2 | BELL | 119.5 | 1.5e-38 | 226 | 297 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er+elq+kk+kLl++++eVdkrY+qy++q+++++ssFe+vaglgsak Yts+Al++iSrhFr+L+dai+eqi 472196 226 EREELQNKKNKLLTMVDEVDKRYNQYYHQMEALASSFEIVAGLGSAKAYTSVALNRISRHFRALRDAIKEQI 297 799********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.9E-48 | 154 | 295 | IPR006563 | POX domain |
Pfam | PF07526 | 3.2E-45 | 160 | 293 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.455 | 344 | 407 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.91E-12 | 347 | 408 | No hit | No description |
SMART | SM00389 | 5.4E-10 | 347 | 411 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.71E-17 | 348 | 414 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.3E-28 | 350 | 413 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.6E-18 | 364 | 403 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence Send to blast |
MAVYYPSNVG CYQQEPIFLN HQQQQASSSS AAASFTVTGS DNVRNEMVFI PPTTTGDVVT 60 GNGAVSSSDL SFHDGQGLSL SLGTQISVAP FHFHQYQLGF TQNPSTSVKE TSPFNVDEMS 120 VKSKEMMLLS QSDPSSGYAG SGFYNNYRYN ETSGGFMSSV LRSRYLKPAQ NLLDEVVSVK 180 KELNQMGKKK MKVNDFNNGS KEIEGGGSGE LSNDLNGKSM ELSTVEREEL QNKKNKLLTM 240 VDEVDKRYNQ YYHQMEALAS SFEIVAGLGS AKAYTSVALN RISRHFRALR DAIKEQIQII 300 REKLGEKGGE SLDEQQGERI PRLRYLDQRL RQQRALHQQL GMVRPAWRPQ RGLPENSVSV 360 LRAWLFEHFL HPYPKESEKI MLAKQTGLSK NQVANWFINA RVRLWKPMIE EMYKEEFGDE 420 SELLISKSSQ EPNSTNQEDS SSQQQQQQEN NNNLTYSSAD TTNIVFSSET KPDRVLGNDN 480 EPQQPQINRS SDYDTLMNYH GFGVDDYRYI SGSNQQESRF SNSHHLHDFV V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 6e-16 | 353 | 411 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 6e-16 | 353 | 411 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 472196 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY570508 | 0.0 | AY570508.1 Arabidopsis thaliana BEL1-like homeodomain 5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870163.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_020870164.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Refseq | XP_020870165.1 | 0.0 | BEL1-like homeodomain protein 10 | ||||
Swissprot | Q9FXG8 | 0.0 | BLH10_ARATH; BEL1-like homeodomain protein 10 | ||||
TrEMBL | D7KI49 | 0.0 | D7KI49_ARALL; Uncharacterized protein | ||||
STRING | fgenesh2_kg.1__2150__AT1G19700.1 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3820 | 19 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19700.3 | 0.0 | BEL1-like homeodomain 10 |
Link Out ? help Back to Top | |
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Phytozome | 472196 |
Entrez Gene | 9329124 |
Publications ? help Back to Top | |||
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