PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

472101

Common Name

ARALYDRAFT_472101

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

M-type_MADS

Protein Properties

Length: 384aa MW: 44236.8 Da PI: 6.735

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
472101	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	73.8	1.3e-23	9	54	1	46
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 kr e++snrqvt++kR++gilKKA+ELS+LCd+++ +++fs+tg+ 472101 9 KRLESTSNRQVTYTKRKTGILKKAKELSILCDIDIVLLMFSPTGRA 54 689*****************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	25.455	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.3E-30	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.1E-26	2	95	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.48E-27	2	82	No hit	No description
PRINTS	PR00404	3.3E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.2E-20	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	3.3E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010152	Biological Process	pollen maturation
GO:0080092	Biological Process	regulation of pollen tube growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MGRVKLKIKR LESTSNRQVT YTKRKTGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE 60 HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ 120 VAIYQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQIHKEH YRKNQLLPIE 180 CATTQFHSGI QLPMAMGGNS SMQEAHSMSW LPDNDNQQTI LPGDSSFLPH REMDGSIPVY 240 SSCFFESTKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLKE EYSYPTQFGT TLRMEDDQEK 300 KIKSEMELNN LQQQQQQQQQ DPSMYDPMAN NNGGCFQIPH DQSMFVNDHH HHHHHHHQNW 360 VPDSMFGQTS YNQVCVYTSI GTM*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MGRVKLKIKR LESTSNRQVT YTKRKTGILK KAKELSILCD IDIVLLMFSP TGRATAFHGE  60
HSCIEEVISK FAQLTPQERT KRKLESLEAL KKTFKKLDHD VNIHDFLGAR NQTIEGLSNQ  120
VAIYQAQLME CHRRLSCWTN IDRIENTEHL NLLEESLRKS IERIQIHKEH YRKNQLLPIE  180
CATTQFHSGI QLPMAMGGNS SMQEAHSMSW LPDNDNQQTI LPGDSSFLPH REMDGSIPVY  240
SSCFFESTKP EDQICSNPGQ QFEHLEQQGN GCLGLQQLKE EYSYPTQFGT TLRMEDDQEK  300
KIKSEMELNN LQQQQQQQQQ DPSMYDPMAN NNGGCFQIPH DQSMFVNDHH HHHHHHHQNW  360
VPDSMFGQTS YNQVCVYTSI GTM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_R	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
1tqe_S	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_A	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_B	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_C	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_D	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_E	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
6c9l_F	8e-14	1	92	1	90	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms a heterodimer with the MADS-box protein AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	472101

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY143172	0.0	AY143172.1 Arabidopsis thaliana MADS-box protein AGL65 (AGL65) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002890300.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Refseq	XP_020867389.1	0.0	agamous-like MADS-box protein AGL65 isoform X1
Swissprot	Q7X9I0	0.0	AGL65_ARATH; Agamous-like MADS-box protein AGL65
TrEMBL	D7KH66	0.0	D7KH66_ARALL; AGL102
STRING	fgenesh2_kg.1__2055__AT1G18750.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5933	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18750.1	0.0	AGAMOUS-like 65

Link Out ? help Back to Top
Phytozome	472101
Entrez Gene	9326362

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]