PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471953
Common NameARALYDRAFT_471953
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 612aa    MW: 68219.3 Da    PI: 5.381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471953genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.25.2e-10505552347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +WT  E e+lv++v ++G g W+ I r      ++Rt  ++k++w+++
           471953 505 AWTVSEVEKLVEGVSKYGVGKWSDIKRLSFspyTHRTSVDLKDKWRNL 552
                      7**************************99899**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.316498557IPR017930Myb domain
SuperFamilySSF466897.03E-16500554IPR009057Homeodomain-like
SMARTSM007172.4E-9502555IPR001005SANT/Myb domain
CDDcd116605.09E-22504554No hitNo description
Gene3DG3DSA:1.10.10.604.1E-12504554IPR009057Homeodomain-like
PfamPF002499.6E-7505552IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MFGNVEGYGD MFQDSIFQTR SGSLSSTNQI GNRVAYKLVR VAGDGTLVPA TDEEMLKVKD  60
LLENNEPDMP VLPEPIQTEK YIPDEGSPSQ FLQLENFEGL FQSETAEAYT ENMNSRHESK  120
EELMYGTQML FALPDTKFQI SNELPGNVEQ VQSEVLLSEP IIFSSNRCSM NQSTDDLYAT  180
GSRNEPKEAA LSTAASKPEV SRVAGEICLD NLSIRALQET FRATFGRETT CKDNRWLKRR  240
ITMGLINSCV VPTTTLTIND NKLIGGDQDA IDAFSKDTLD EERAIESKDT PSSPDCIKGH  300
LDDFGHTSVE TFVDYYSGNE DFDGEHRSAK RVRKPTRRYI VETSETGERQ QSDESMIPSK  360
DQSSIQAVSS GGGVVVTRMV SLAGSRIQVP YVSHVRRSRP RENIMALGEF HSKSWEVKAT  420
PEKGNLNLSP SQLNNDVNRV PAVNSAPRLV QKEVSDKDHL KPIFTEVDQD MMEPELLDSS  480
GDSSDDNCVD VPITQSEIRR KLHRAWTVSE VEKLVEGVSK YGVGKWSDIK RLSFSPYTHR  540
TSVDLKDKWR NLQKASSSNR MGGGLKKHGS MAIPSHIMLQ VRELAQKQSP ISPVESKARV  600
VKRSRSRNGF L*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1601606KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMap471953
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0806650.0AY080665.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds.
GenBankAY1229660.0AY122966.1 Arabidopsis thaliana unknown protein (At1g17460) mRNA, complete cds.
GenBankAY5195370.0AY519537.1 Arabidopsis thaliana MYB transcription factor (At1g17460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867515.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867516.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867517.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867518.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867519.10.0uncharacterized protein LOC9326289 isoform X1
RefseqXP_020867520.10.0uncharacterized protein LOC9326289 isoform X1
TrEMBLD7KFF70.0D7KFF7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__1907__AT1G17460.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.10.0TRF-like 3