PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471806
Common NameARALYDRAFT_471806
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 333aa    MW: 37674.4 Da    PI: 5.9159
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471806genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.71e-1147103155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
             s ++GV++++++gr++A+++d  s+n  ++k+ + g ++ ++ Aa+a++ a++k++g
  471806  47 SVHRGVTRHRWTGRYEAHLWDkNSWNEtQSKKGRQGAYDEEDAAARAYDLAALKYWG 103
             689******************88889998888888*****99*************98 PP
2AP251.13.4e-16146197155
     AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV  ++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  471806 146 SKYRGVAKHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDIAAIEYRG 197
             89****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.58E-1447112IPR016177DNA-binding domain
SMARTSM003806.5E-1848117IPR001471AP2/ERF domain
PfamPF008473.9E-848103IPR001471AP2/ERF domain
PROSITE profilePS5103218.51848111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-1148111IPR001471AP2/ERF domain
PRINTSPR003672.9E-54960IPR001471AP2/ERF domain
CDDcd000181.88E-14146207No hitNo description
PfamPF008473.6E-11146197IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17146207IPR016177DNA-binding domain
SMARTSM003805.9E-26147211IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-17147205IPR001471AP2/ERF domain
PROSITE profilePS5103217.859147205IPR001471AP2/ERF domain
PRINTSPR003672.9E-5187207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MEEITRKSKK TSVENETGDD QSATSVVVKA KRKRRSQPRD APPQRSSVHR GVTRHRWTGR  60
YEAHLWDKNS WNETQSKKGR QGAYDEEDAA ARAYDLAALK YWGRDTILNF PLCNYEEDIK  120
EMESQSKEEY IGSLRRKSSG FSRGVSKYRG VAKHHHNGRW EARIGRVFGN KYLYLGTYAT  180
QEEAAIAYDI AAIEYRGLNA VTNFDISRYM KLPVPENPID AANNLLESPH SDSSPFINPT  240
HESDLSQSQS SSDDNDDRKT KLLKSSPLNA EEVIGPSTPP EIAPPRRSFP EDIQTYFGCQ  300
NSGKLTTEED DVIFGDLDSF LTPDFYSELN DC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap471806
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0459150.0AY045915.1 Arabidopsis thaliana unknown protein (At1g16060) mRNA, complete cds.
GenBankAY1338800.0AY133880.1 Arabidopsis thaliana clone U10081 unknown protein (At1g16060) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870339.10.0AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
SwissprotQ94AN40.0AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLD7KDM70.0D7KDM7_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__1760__AT1G16060.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.10.0ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]