PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471484
Common NameARALYDRAFT_471484
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 304aa    MW: 34485 Da    PI: 6.8201
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471484genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05101120120
              EEETTTTEEESSHHHHHHHH CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
              ++C+ C+k+F+r  n++ H+
   471484 101 FSCSVCNKTFNRFNNMQMHM 120
              89*****************9 PP
2zf-C2H210.90.0014186209123
              EEET.TTTEEESSHHHHHHHHHHT CS
  zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
              ++C  +C k+F  + + ++H +++
   471484 186 FRCRkKCEKTFAVRGDWRTHEKNC 209
              89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.57E-597122No hitNo description
PROSITE profilePS5015710.263101128IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.7E-6101120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-4172207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MYNNNQYSFS GDEDSVVLRL GPPGQPYPSH IKPTSTKPSS DHEFNHPLTN PNGVTVALHI  60
GPPSSDKETL TGGNNQEGLT ARQGQYWIPS LSQILVGPTQ FSCSVCNKTF NRFNNMQMHM  120
WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRSKPLKDF RTLQTHYKRK  180
HGAKPFRCRK KCEKTFAVRG DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH VKAFGDGHAA  240
HTVGDRVVAI GDADEDDEEE EEEEEDDDDE EEDAHEENVR GEKNYGIRYD HFRRYGQISD  300
DNY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap471484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118090.0AJ311809.1 Arabidopsis thaliana mRNA for WIP6 protein (At1g13290 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020870727.10.0zinc finger protein WIP6
SwissprotQ9FX680.0ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLD7KQE10.0D7KQE1_ARALL; Zinc finger family protein
STRINGfgenesh2_kg.1__1438__AT1G13290.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.10.0C2H2-like zinc finger protein