PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 471132
Common NameARALYDRAFT_471132
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family NF-X1
Protein Properties Length: 1135aa    MW: 124317 Da    PI: 8.1495
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
471132genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X121.35.9e-07336354119
  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
               CG+H+C ++CH GpC+pC+
    471132 336 CGRHQCVRTCHVGPCDPCQ 354
               ******************6 PP
2zf-NF-X1186.1e-06400417118
  zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
               CG+H C++ CH+GpC+ C
    471132 400 CGNHFCSEVCHPGPCGDC 417
               ****************99 PP
3zf-NF-X118.34.9e-06462476418
  zf-NF-X1   4 HkCqklCHeGpCppC 18 
               H+C++ CH G+CppC
    471132 462 HTCNEMCHAGDCPPC 476
               *************** PP
4zf-NF-X118.64.2e-06557575119
  zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
               CG+H+C++lCH G CppC 
    471132 557 CGQHSCESLCHSGHCPPCL 575
               ******************6 PP
5zf-NF-X118.44.6e-06667682116
  zf-NF-X1   1 CGkHkCqklCHeGpCp 16 
               CG+H C ++CH+ pC+
    471132 667 CGMHACARTCHPEPCD 682
               ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578506.36E-6158229No hitNo description
PROSITE profilePS500168.956166227IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590169224IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.465169225IPR001841Zinc finger, RING-type
CDDcd060082.99E-6258319No hitNo description
SMARTSM004380.05281299IPR000967Zinc finger, NF-X1-type
PfamPF014223.8283298IPR000967Zinc finger, NF-X1-type
CDDcd060082.58E-12326374No hitNo description
PfamPF014227.1E-5336353IPR000967Zinc finger, NF-X1-type
SMARTSM004381.5E-4336355IPR000967Zinc finger, NF-X1-type
CDDcd060081.68E-8394435No hitNo description
PfamPF014227.3E-5400417IPR000967Zinc finger, NF-X1-type
SMARTSM004382.6E-5400419IPR000967Zinc finger, NF-X1-type
CDDcd060085.73E-13449496No hitNo description
SMARTSM004382.3E-5459478IPR000967Zinc finger, NF-X1-type
PfamPF014225.3E-4461476IPR000967Zinc finger, NF-X1-type
CDDcd060081.00E-4508568No hitNo description
PfamPF0142219518529IPR000967Zinc finger, NF-X1-type
SMARTSM00438170518553IPR000967Zinc finger, NF-X1-type
CDDcd060083.20E-9547599No hitNo description
PfamPF014221.0E-4557574IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4557576IPR000967Zinc finger, NF-X1-type
CDDcd060089.67E-7604651No hitNo description
SMARTSM004380.021614632IPR000967Zinc finger, NF-X1-type
PfamPF0142225621631IPR000967Zinc finger, NF-X1-type
PfamPF014220.0071667682IPR000967Zinc finger, NF-X1-type
SMARTSM004384.7E-4667697IPR000967Zinc finger, NF-X1-type
PfamPF014220.04699725IPR000967Zinc finger, NF-X1-type
SMARTSM004380.021706727IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1135 aa     Download sequence    Send to blast
MSFQVRRDRT DDRSRFNPQQ TWIPRNASTS SVVVNEPLLP PNESLDAASR PLYLQRQHNV  60
SGPPPYNHHQ RSNNNIGPPP PNRHRRNNAP DNHHQRSDNN LGPPPPNRQR RNNASGTLPD  120
NHQRVASRTR PVNQGKRVAN EENIVLTDPN LPQLVQELQE KLVKSSIECM ICYDKVGRSA  180
NIWSCSSCYS IFHINCIKRW ARAPTSIDLL AEKNQGDNWR CPGCQSVQLT SSKEISYQCF  240
CGKRRDPPSD PYLTPHSCGE PCGKPLEKEL AAAGTTKEDL CPHACVLQCH PGPCPPCKAF  300
APPRSCPCGK KMVTTRCSER RSDLICGQRC DKLLNCGRHQ CVRTCHVGPC DPCQVLVNAT  360
CFCKKKVETV ICGDMNVKGE LKAEDGVYSC SFNCGKPLGC GNHFCSEVCH PGPCGDCDLL  420
PSRVKTCYCG KTRLEDQIRR SCLDPIPSCS NVCRKLLPCR LHTCNEMCHA GDCPPCLVQV  480
NQKCRCGSTS RAVECYITTS SETEKFVCAK PCGRKKNCGR HRCSERCCPL LNGKKNDLSG  540
DWDPHVCQIP CQKKLRCGQH SCESLCHSGH CPPCLEMIFT DLTCACGRTS IPPPLPCGTP  600
VPSCQLPCSI PQPCGHSDTH GCHFGDCPPC SAPVEKKCVG GHVVLRNIPC GLKDIRCNKI  660
CGKTRRCGMH ACARTCHPEP CDSFNESEAG MRVTCRQKCG APRRDCRHTC AALCHPSAPC  720
PDLRCEFSVT ITCSCGRITA TVPCDAGGRS ANGSNVYSAA YDEASVLQKL PAPLQPVESS  780
GNRIPLGQRK LSCDDECAKL ERKRVLQDAF DITPPNLEAL HFSENSAMTE IISDLYRRDP  840
KWVLAVEERC KFLVLGKARG STSALKVHVF CPMQKDKRDT VRLIAERWKL GVSNAGWEPK  900
RFTVVHVTPK SKPPTRIIGA RGGAISIGGP HPPFFDPLVD MDPGLVVSLL DLPREANISA  960
LVLRFGGECE LVWLNDKNAL AVFHDHARAA TAMRRLEHGS VYHGAVVVQN DGQSPSLNNA  1020
WGKLPGGSAW DVHKGNPWRK AVIQESDDSW GAEDSPIGGS STDIQASAQR SAKSNTPIVT  1080
SVNRWSVLEP EKASTSTLEP IAQIEESSSS KSTGKQPVGG SGEEVVDDWE KVCE*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap471132
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0054890.0AC005489.1 Genomic sequence for Arabidopsis thaliana BAC F14N23 from Chromosome 1, complete sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020868765.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLD7KKM70.0D7KKM7_ARALL; NF-X1 type zinc finger family protein
STRINGfgenesh2_kg.1__1086__AT1G10170.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1