PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 470588
Common NameARALYDRAFT_470588
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 358aa    MW: 38588.9 Da    PI: 7.2028
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
470588genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.11e-10290335655
             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
             +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  470588 290 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 335
             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.656284334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-14287347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.48E-11288339No hitNo description
Gene3DG3DSA:4.10.280.105.4E-13289347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-12290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MYQSSSSTSS SSQRSSLPGG GGLIRYGSAP GSFLNAVVDE VIGGGSSNAR DFTGYQPSSD  60
NFIGNFFTGA DSSSLRSDST TCGVNSSDGQ KQLGNNNNNK DIFLDRTYGG YNEISQQHKS  120
NDIGGNSSGS SYSLARQRSS PADFFTYLSA DKNNFSLNQP TSDYNPQGGS NAGRGHSRLK  180
SQLSFTNHDS LARINEVNET PVHDGSDHSF SAASFGAAAT DSWDDGSGSI GFTVTRPNKR  240
SKDMDSGLFS QYSLPSDASM NYMDNFMQLP EDSVPCKIRA KRGCATHPRS IAERERRTRI  300
SGKLKKLQDL VPNMDKQTSY SDMLDLAVQH IKGLQHQLQN LKKDQENCTC GCSERPS*
Cis-element ? help Back to Top
SourceLink
PlantRegMap470588
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0861060.0AY086106.1 Arabidopsis thaliana clone 21406 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020867821.10.0transcription factor bHLH128
SwissprotQ8H1020.0BH128_ARATH; Transcription factor bHLH128
TrEMBLD7KF790.0D7KF79_ARALL; Basic helix-loop-helix family protein
STRINGfgenesh2_kg.1__542__AT1G05805.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117772631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]