PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 470423 | ||||||||
Common Name | ARALYDRAFT_470423 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 154aa MW: 17599.8 Da PI: 9.7924 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 8 | 28 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 +C +C+++F ++++L +H + 470423 8 ECAICKRVFLSSHHLISHFND 28 6*****************765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.265 | 7 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 9 | 30 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MAFSNPQECA ICKRVFLSSH HLISHFNDVH SNRHGSTFSS SAIATPTSFR HYPNVNRNPN 60 PDFQARNHFD VNYYRRGYLD DHGRFHKGCS PTPVITPTRK YKFLLPKMPT TPKLMDLFPT 120 LPLIWQLEQR RAEDSAVTEN GGANSSSIDL SLRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 470423 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493430 | 2e-76 | AB493430.1 Arabidopsis thaliana At1g04445 mRNA for hypothetical protein, partial cds, clone: RAAt1g04445. | |||
GenBank | CP002684 | 2e-76 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. | |||
GenBank | F19P19 | 2e-76 | AC000104.1 Sequence of BAC F19P19 from Arabidopsis thaliana chromosome 1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020870674.1 | 1e-110 | uncharacterized protein LOC9325570 | ||||
TrEMBL | D7KDE8 | 1e-112 | D7KDE8_ARALL; Uncharacterized protein (Fragment) | ||||
STRING | fgenesh2_kg.1__377__AT1G04445.1 | 1e-112 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13551 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04445.1 | 4e-72 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 470423 |
Entrez Gene | 9325570 |