PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 470374
Common NameARALYDRAFT_470374
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bZIP
Protein Properties Length: 273aa    MW: 30639.2 Da    PI: 5.5131
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
470374genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_158.31.7e-18188249263
             XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
  bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
             ++ +r++r++kNRe+A rsR+RK+a++ eLe+ +++Le+eN++L ke+ee +ke +k  +ev
  470374 188 AAAQRQKRMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKEIEESTKERYKKLMEV 249
             5789***************************************************9988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-14186242No hitNo description
SMARTSM003381.3E-14187251IPR004827Basic-leucine zipper domain
PfamPF001701.1E-17188249IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.277189241IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.38E-10191243No hitNo description
CDDcd147073.48E-18191237No hitNo description
PROSITE patternPS000360194209IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MASFKLMSSS NSDLSRRNSS SASSSPSIRS SSHHLRPNPL ADHSRISFAY GGGNDYTFAS  60
DSKPFEMAID VDWSIGDRNS VNNGKSVDDV WKEIVSGEQK AIMMKEEEQE DMMTLEDFLA  120
KAAMDDGGSD EIDVKIPPER LNNDGSYTFD FPMQRHSSFQ MIEGSMGGGG GTMRGKRGRV  180
MTEAMDKAAA QRQKRMIKNR ESAARSRERK QAYQVELETL AAKLEEENEQ LLKEIEESTK  240
ERYKKLMEVL IPVDEKPRPP SRPLSRSHSL EW*
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap470374
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030270.0AC003027.1 Arabidopsis thaliana chromosome I BAC F21M11 genomic sequence, complete sequence.
GenBankAY0876030.0AY087603.1 Arabidopsis thaliana clone 36980 mRNA, complete sequence.
GenBankBT0244950.0BT024495.1 Arabidopsis thaliana At1g03970 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankU018230.0U01823.1 Arabidopsis thaliana Columbia bZIP protein GBF4 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020869466.11e-169G-box-binding factor 4
SwissprotP427771e-170GBF4_ARATH; G-box-binding factor 4
TrEMBLD7KDA00.0D7KDA0_ARALL; Uncharacterized protein
STRINGfgenesh2_kg.1__328__AT1G03970.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.11e-117G-box binding factor 4