PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

358861

Common Name

ARALYDRAFT_358861

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Nin-like

Protein Properties

Length: 274aa MW: 31762.3 Da PI: 8.9816

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
358861	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	83.9	1.5e-26	153	202	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++s e++++yF++pi++AAkeL++++T+LK++CR++GI+RWPhRk++sl 358861 153 NSLSREMMKQYFYMPITKAAKELNIGVTLLKKRCRELGIPRWPHRKLTSL 202 67999******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.713	138	222	IPR003035	RWP-RK domain
Pfam	PF02042	6.6E-22	155	202	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MADQKPLMVW SEANNYESFL QEDIFSFLDQ SLSIDPHSSF INPFKDFQTQ TWFSFQDSIV 60 NPISTTFAAD HTFLASLDLE AISNIMSGWW NDNNGNYNNQ VEPILDDISR TNTMGDPKME 120 KILHEDVNTT IKEKTSQKRI IMKRRYREDG DINSLSREMM KQYFYMPITK AAKELNIGVT 180 LLKKRCRELG IPRWPHRKLT SLNALIANLK DLLGNTEGKT PKSKLRNALE LLEMEKKMIE 240 EVPDLEFGDK TKRLRQACFK AKYKQRRLFS SSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	358861

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-169	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-169	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020871493.1	0.0	protein RKD3
Swissprot	Q9FGD1	1e-176	RKD3_ARATH; Protein RKD3
TrEMBL	D7MLD2	0.0	D7MLD2_ARALL; RWP-RK domain-containing protein
STRING	fgenesh1_pg.C_scaffold_8002648	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12180	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	1e-162	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	358861
Entrez Gene	9301111

Publications ? help Back to Top
Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis. New Phytol., 2017. 213(4): p. 1909-1924 [PMID:27870062]