PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 358841
Common NameARALYDRAFT_358841
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 351aa    MW: 39375.8 Da    PI: 8.8057
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
358841genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1797146155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  358841  97 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 146
             78*******************......55************************997 PP
2AP2445.7e-14189239155
     AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
             s+y+GV+ +k  grW++++  +     + k+++lg f+t+ eAa+a+++a+ k +g
  358841 189 SKYRGVTLHK-CGRWESRLGQF----LNkKYVYLGLFDTEIEAARAYDKAAIKCNG 239
             89********.7****995553....234**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-997146IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-1697155IPR016177DNA-binding domain
SMARTSM003802.7E-3198160IPR001471AP2/ERF domain
CDDcd000182.58E-1198155No hitNo description
PROSITE profilePS5103217.89998154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-1798154IPR001471AP2/ERF domain
CDDcd000183.26E-24189247No hitNo description
PfamPF008473.9E-9189239IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-17189248IPR016177DNA-binding domain
SMARTSM003805.7E-31190253IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-17190247IPR001471AP2/ERF domain
PROSITE profilePS5103215.488190247IPR001471AP2/ERF domain
PRINTSPR003675.0E-6191202IPR001471AP2/ERF domain
PRINTSPR003675.0E-6229249IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MWNLNDSPDH HEESDSRGNP VGHVSYGTSQ SVTWLPSVLP VTRNFFPARS MEPGFRCSGF  60
NSVGKSDPSG SGRPEEAEPE ISPPIKKSRR GPRSRSSQYR GVTFYRRTGR WESHIWDCGK  120
QVYLGGFDTA HAAARAYDRA AIKFRGVDAD INFDIEDYVD DLKQMGNLTK EEFMHVLRRQ  180
STGFPRGSSK YRGVTLHKCG RWESRLGQFL NKKYVYLGLF DTEIEAARAY DKAAIKCNGK  240
DAVTNFDPKV YEEELSPETT RNGHNLDLSL GESNSEEFGL KSDIASIRNR IRDEERLLGR  300
DLSLAMMTTT VRSEKQTDGG GNRVGMAASS GFSPQPSPYR IPHTFHFSRP *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). May regulate negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap358841
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1761450.0AK176145.1 Arabidopsis thaliana mRNA for floral homeotic protein apetala2-like, complete cds, clone: RAFL22-96-G17.
GenBankAY0882380.0AY088238.1 Arabidopsis thaliana clone 4623 mRNA, complete sequence.
GenBankBT0292060.0BT029206.1 Arabidopsis thaliana At5g67180 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865021.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotQ9FH950.0TOE3_ARATH; AP2-like ethylene-responsive transcription factor TOE3
TrEMBLD7MKS60.0D7MKS6_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80026280.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67180.10.0target of early activation tagged (EAT) 3
Publications ? help Back to Top
  1. Zumajo-Cardona C,Pabón-Mora N
    Evolution of the APETALA2 Gene Lineage in Seed Plants.
    Mol. Biol. Evol., 2016. 33(7): p. 1818-32
    [PMID:27030733]