PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

358733

Common Name

ARALYDRAFT_358733

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

bHLH

Protein Properties

Length: 282aa MW: 32304.7 Da PI: 9.5868

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
358733	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.5	2.4e-13	92	143	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L+ +P + +s+ ++ a+i e +++Y+k+L+ 358733 92 QRMNHIAVERNRRKQMNHFLSILKFFMPLS---YSQPNDQASIIEGTINYLKKLE 143 79**************************...*****************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.07E-10	89	147	No hit	No description
SuperFamily	SSF47459	4.06E-15	91	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.037	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-11	92	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-11	92	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-6	97	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MFSHVETSSL SYEILDYLQN FVVSNSENVA SQQNSLSSSS YSSATLSCSI TEQQSHLTEK 60 LSHVRGRCSC GDVLSRKRRR RSENTMEDKE YQRMNHIAVE RNRRKQMNHF LSILKFFMPL 120 SYSQPNDQAS IIEGTINYLK KLEHRLQSLE AQLKATKPNK SPNIFSDFFM FPQYSTTASS 180 SPSSHYHHKR LPAVADVEVT MVEKHINIKV LTKTRPRLLF KIINEFYSLG LSTLHLNLTT 240 SKDMYLFTFS VKVEADCQLM PSGNEIANAV HEVVRRVHKE S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	79	RKRRR
2	75	81	RKRRRRS
3	92	103	RMNHIAVERNRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	358733

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY070095	0.0	AY070095.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.
GenBank	AY096704	0.0	AY096704.1 Arabidopsis thaliana unknown protein (At5g65320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866665.1	0.0	transcription factor bHLH99
Swissprot	Q9FKQ6	1e-141	BH099_ARATH; Transcription factor bHLH99
TrEMBL	D7MTX1	0.0	D7MTX1_ARALL; Basic helix-loop-helix family protein
STRING	fgenesh1_pg.C_scaffold_8002520	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14959	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	1e-138	bHLH family protein

Link Out ? help Back to Top
Phytozome	358733
Entrez Gene	9302737

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]