PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 358332 | ||||||||
Common Name | ARALYDRAFT_358332 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 407aa MW: 45905 Da PI: 8.1467 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.5 | 7.7e-16 | 214 | 259 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hne ErrRRdriN+++ +L++llP+a K +K++iL ++e++k+Lq 358332 214 HNESERRRRDRINQRMRTLQKLLPTA-----SKADKVSILDDVIEHLKQLQ 259 *************************9.....7******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 17.06 | 209 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.06E-18 | 212 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.5E-17 | 214 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.78E-8 | 214 | 263 | No hit | No description |
Pfam | PF00010 | 4.4E-13 | 214 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-16 | 215 | 264 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0016607 | Cellular Component | nuclear speck | ||||
GO:0003690 | Molecular Function | double-stranded DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 407 aa Download sequence Send to blast |
MDQRQIHRMS CRCECQEFEN KEEERRSQTF QARRKREERR SNYGVKELTW ENGQLTVHGL 60 GEEVEPTTSN NPIWTQSLNG CETLESVVHQ AALQQPSKLQ LQSPMLSPNH NYESKDGSCS 120 RKRGYPQEMD GMDRWFAVQE ESHRVGHSVT ASDSGTNMSW ASFESARSLK TARTGDRDYI 180 RSGSETQDTE GDEQETRGEA GRSSGRRGRA AAIHNESERR RRDRINQRMR TLQKLLPTAS 240 KADKVSILDD VIEHLKQLQA QVQFMSLRAN LPQQMMIPQL PPPQSVLSIQ HQQQQQQQQQ 300 QQQQQFQMSL LATMARMGMG GGGNGYGGLV PPPPPPPLMV PPMGNRDCTN GSSATLTDPY 360 SAFFAQTMNM DLYNKMAAAI YRQQSDQSTK VNTGMPSSSS NHEKRD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 222 | ERRRRD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting negatively in the phytochrome B signaling pathway under prolonged red light. Regulates PHYB abundance at the post-transcriptional level, possibly via the ubiquitin-proteasome pathway. May regulate the expression of a subset of genes by binding to the G-box motif. {ECO:0000269|PubMed:15486100, ECO:0000269|PubMed:18252845}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00571 | DAP | Transfer from AT5G61270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 358332 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By red light. Stable upon light exposure. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF488604 | 0.0 | AF488604.2 Arabidopsis thaliana clone bHLH072 putative bHLH transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020871149.1 | 0.0 | transcription factor PIF7 | ||||
Swissprot | Q570R7 | 0.0 | PIF7_ARATH; Transcription factor PIF7 | ||||
TrEMBL | D7MUJ2 | 0.0 | D7MUJ2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_8002119 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14123 | 18 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61270.1 | 1e-157 | phytochrome-interacting factor7 |
Link Out ? help Back to Top | |
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Phytozome | 358332 |
Entrez Gene | 9300804 |