PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 357809
Common NameARALYDRAFT_357809
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family M-type_MADS
Protein Properties Length: 511aa    MW: 55027.3 Da    PI: 4.1509
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
357809genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.22.8e-15747343
            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
            i n+  r +t+ kR++ + KKA+E S+LC+++ ++i+++++
  357809  7 IMNEKTRITTYKKRKACLYKKASEFSTLCGVDTCLIVYGPS 47
            88999**********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.231157IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-17296IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-8256IPR002100Transcription factor, MADS-box
CDDcd002664.96E-25277No hitNo description
PfamPF003195.5E-16647IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MVKMVKIMNE KTRITTYKKR KACLYKKASE FSTLCGVDTC LIVYGPSRAG DEMVAEPELW  60
PKDERKVREI ITKYRDTVSS NCTKTYTVQE CLEKNNTKEE KPKIAMEYPT WDKKLDKCSL  120
NDLYLVFMAV ENKIQEATNR NQTFPDTTCW SNDQLGLCGY NQQCFEQYQL FPLPTMEHNG  180
FSFFPFNNQM TSNTAEVASF SNVTEPMIAN GQNLFYGSCS DGPYGPVVQR TAYMEPIQWG  240
LGNSVFNNVK QFQDYPFRFA QVNDLEDSRN ISGVLAGVDG ILRVVIGDVG AISGVSAVTG  300
AWFDGAVAGD SVEVVGLIVG ADIGDFTGIV VGGETREVAG VETGVVAVVG EETGEVAGDK  360
TGEFKGDAMV RDVTGEVAGD ETGDFNGEEI VRDETGDVAG VKAGVRDGEA AGVNTRDFDG  420
DSTVRDGEIA GVITGDIKGD VMVRDVTGEV TGETTGYFDG VTNAGEETED FSGDFVGEVC  480
FVGGGSSGGF WITGGCKVGV RGDVDGEITR *
Cis-element ? help Back to Top
SourceLink
PlantRegMap357809
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0090500.0AB009050.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDF20.
GenBankAY1412140.0AY141214.1 Arabidopsis thaliana MADS-box protein AGL47 mRNA, complete cds.
GenBankBT0260420.0BT026042.1 Arabidopsis thaliana At5g55690 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879548.10.0agamous-like MADS-box protein AGL82
TrEMBLD7MKK30.0D7MKK3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80015960.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59481947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.10.0M-type_MADS family protein