PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 357440
Common NameARALYDRAFT_357440
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C2H2
Protein Properties Length: 339aa    MW: 39076 Da    PI: 5.7865
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
357440genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.0001392115123
              EEETTTTEEESSHHHHHHHHHH.T CS
  zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
              y C+ Cg+ ++++ +Lk+H +  H
   357440  92 YICGVCGRKCKTNLDLKKHFKQlH 115
              89*****************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10101.3E-41282IPR029060PIN domain-like
PROSITE profilePS5015710.57592120IPR007087Zinc finger, C2H2
PROSITE patternPS00028094115IPR007087Zinc finger, C2H2
CDDcd061672.89E-11106246No hitNo description
Gene3DG3DSA:3.40.50.10101.3E-4177242IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVRNKEGIFA PKEKKVVVLW DLDNKPPRGP PYEAATALRK VAENLGRVVE ISAYANRHAF  60
IHLPHWVVEE RRERRNLDFM ERKGEVTPID PYICGVCGRK CKTNLDLKKH FKQLHERERQ  120
KKVNRMRSLK GKKRQKFKER YVSRNDKYNE AARRLLTPKV GYGLEAELRR AGVYVKTVED  180
KPQAADWAVK RQIQHSMTRG IDWLVLVSDD KDFSDMLRKA READLGTLVV SDRDRALGRH  240
ADLWVPWSGV EKGEIGEMDL IPGKRPRFEE DEESEVGFSG GDELFSLSYD EDERAEMTVE  300
SDGLGRFNVS AFSEDEWVED EGDFALSDSD DDSDDELF*
Cis-element ? help Back to Top
SourceLink
PlantRegMap357440
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154780.0AB015478.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSG15.
GenBankAY0395920.0AY039592.1 Arabidopsis thaliana AT5g52010/MSG15_9 mRNA, complete cds.
GenBankAY0854060.0AY085406.1 Arabidopsis thaliana clone 150246 mRNA, complete sequence.
GenBankAY1294890.0AY129489.1 Arabidopsis thaliana AT5g52010/MSG15_9 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865887.20.0uncharacterized protein LOC9301961
TrEMBLD7MRL30.0D7MRL3_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_80012270.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.10.0C2H2-like zinc finger protein