PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 356484
Common NameARALYDRAFT_356484
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BES1
Protein Properties Length: 683aa    MW: 76319.6 Da    PI: 5.7808
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
356484genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822163.31.5e-50782271145
  DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspesslq.sslkssa 102
             gg+g+++++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+V++AL+reAGw v++DGttyr++ +p+     ++++ ++s+es+l+ s+lk++a
  356484  78 GGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVIAALAREAGWSVDADGTTYRQSHQPN----NVVQFPTRSIESPLSsSTLKNCA 176
             6899***********************************************************************9....899999999999999899***** PP

  DUF822 103 laspvesysaspksssfpspssldsislasa........asllpvlsvlsl 145
             +a+   +++++++ ++ +sp+slds+ +a++        +  +p++sv +l
  356484 177 KAALECQQHSVLRIDENLSPVSLDSVVIAESdhpgngryTGASPITSVGCL 227
             ****************************99888888777667777777775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.8E-4879226IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514453.54E-159247680IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.2E-166250679IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.5E-80255643IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52285299IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52306324IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52328349IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52421443IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52494513IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52528544IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52545556IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52563586IPR001554Glycoside hydrolase, family 14
PRINTSPR007501.0E-52601623IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MHTLNTTTGS QDPNFDPIPD PDQFPNRNRN LQQSRRPRGF AAAAAAASIA PTENDVNNGN  60
IAGIGGGEGS SSGGGGGGGK GKREREKEKE RTKLRERHRR AITSRMLAGL RQYGNFPLPA  120
RADMNDVIAA LAREAGWSVD ADGTTYRQSH QPNNVVQFPT RSIESPLSSS TLKNCAKAAL  180
ECQQHSVLRI DENLSPVSLD SVVIAESDHP GNGRYTGASP ITSVGCLEAN QLIQDVHAAE  240
PRNDFTEGFY VPVYAMLPVG IIDSFGQLVD PEGVRQELSY MKSLNVDGVV IDCWWGIVEG  300
WNPQKYVWSG YRELFNIIRD FKLKLQVVMA FHEYGGNASG NVMISLPQWV LEVGKDNPDI  360
FFTDREGRRS FECLNWSIDK ERVLHGRTGI EVYFDFMRSF RSEFDDLFVE GLIAAVEIGL  420
GASGELKYPS FPERMGWIYP GIGEFQCYDK YSQLNLQKEA KSRGFAFWGK GPENAGQYNS  480
QPHETGFFQE RGEYDSYYGR FFLNWYSQLL IGHAENVLSL ANLAFEETKI IVKIPAIYWS  540
YKTASHAAEL TAGYYNPSNR DGYSLVFETL KKYSVTAKFV CPGPQMSPNA HEEALADPEG  600
LSWQVINAAW DKGLLIGGEN MITCFDREGC MRLIDIAKPR NHPDSYHFSF FTYRQPSPLV  660
QGSTCFPDLD YFIKRMHGDI QR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wqs_A1e-11624868010447Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap356484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1171400.0AK117140.1 Arabidopsis thaliana At5g45300 mRNA for putative beta-amylase, complete cds, clone: RAFL16-68-D16.
GenBankBT0064820.0BT006482.1 Arabidopsis thaliana At5g45300 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002865252.10.0beta-amylase 8 isoform X1
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLD7MUR10.0D7MUR1_ARALL; Beta-amylase
STRINGfgenesh1_pg.C_scaffold_80002710.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108882832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]