PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 356188 | ||||||||
Common Name | ARALYDRAFT_356188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 150aa MW: 16957.7 Da PI: 9.4391 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 24.2 | 7e-08 | 88 | 118 | 27 | 57 |
NF-YC 27 kkilkadedvkmisaeaPvllskacelfile 57 k ++k+ ++ km+s ++P l+kace+fi e 356188 88 KSVMKFTPHFKMVSLDSPCHLAKACEIFIEE 118 789*************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.1E-5 | 88 | 118 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 150 aa Download sequence Send to blast |
MMRPTVASSS VNPNPSIEEY CIMMKPSEPY VHSVRQIHDI KKASLSYEPG KTSTKLRSRD 60 VSGSPQFHFR GKTKGYMTRL IYLWLGKKSV MKFTPHFKMV SLDSPCHLAK ACEIFIEEGV 120 PHDVVHQQMF TSANVNVPEM KTLIDVDQI* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 356188 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | D7MK45 | 1e-108 | D7MK45_ARALL; Predicted protein | ||||
STRING | fgenesh1_pg.C_scaffold_7003361 | 1e-108 | (Arabidopsis lyrata) |
Link Out ? help Back to Top | |
---|---|
Phytozome | 356188 |
Entrez Gene | 9306938 |