PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 353481
Common NameARALYDRAFT_353481
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 251aa    MW: 29101.3 Da    PI: 9.9704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
353481genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ed+ l ++v+q+G+++W+ Ia+++  gR++k+c++rw++ 
           353481 19 RGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLY-GRSGKSCRLRWYNQ 64
                     899****************************9.************96 PP
2Myb_DNA-binding551.9e-1771114146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      ++++T+eE+e+l++a++  G++ W++Iar ++ gRt++ +k++++ 
           353481  71 KKPFTEEEEERLLKAHRIQGNR-WASIARLFP-GRTDNAVKNHFHV 114
                      689*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.4871469IPR017930Myb domain
SuperFamilySSF466895.24E-2917112IPR009057Homeodomain-like
SMARTSM007173.4E-141867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-252072IPR009057Homeodomain-like
CDDcd001674.77E-132263No hitNo description
PfamPF139211.2E-162282No hitNo description
PROSITE profilePS5129418.44870120IPR017930Myb domain
SMARTSM007171.5E-1470118IPR001005SANT/Myb domain
CDDcd001678.60E-1173113No hitNo description
Gene3DG3DSA:1.10.10.604.2E-2073118IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEMSRGSNSF DNKKPSCQRG HWRPVEDDNL RQLVEQYGPK NWNFIAQHLY GRSGKSCRLR  60
WYNQLDPNIT KKPFTEEEEE RLLKAHRIQG NRWASIARLF PGRTDNAVKN HFHVIMARRK  120
RENFSSTATS TFNQTWHNVL SPSSSITRLN RSQFGLWRYR KDKSHDLWPY SFVSAPINDQ  180
FGSSSVSNVR HEIYLERRKS KELVDDHNYT FHAATPDHKK TSNEDGPSIG DDGEKNDVTF  240
IDFLGVGLAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-34151193107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap353481
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1425170.0AY142517.1 Arabidopsis thaliana putative transcription factor (At4g33450) mRNA, complete cds.
GenBankAY5196110.0AY519611.1 Arabidopsis thaliana MYB transcription factor (At4g33450) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002867181.10.0transcription factor MYB3R-3
TrEMBLD7M8R20.0D7M8R2_ARALL; AtMYB69
STRINGfgenesh1_pg.C_scaffold_70006540.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101332036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.10.0myb domain protein 69