PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 352687 | ||||||||
Common Name | ARALYDRAFT_352687 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | NAC | ||||||||
Protein Properties | Length: 526aa MW: 59053.4 Da PI: 4.7069 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 39.6 | 1.6e-12 | 4 | 50 | 2 | 48 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 pGf F+Ptdeel+++yLk+k+ g++ ++++i+e++i++++P+++ 352687 4 KPGFGFRPTDEELISYYLKNKILGNTWLVDDTINEINILNHHPSSFS 50 59************************999999***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 11.098 | 1 | 111 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.54E-19 | 4 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-9 | 5 | 92 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MEQKPGFGFR PTDEELISYY LKNKILGNTW LVDDTINEIN ILNHHPSSFS FTKIKDESGN 60 KIGKKRGILF DDLDAPKAKG EKSSWVIHEY QITSLPHPNL DSYVLYKIFD NNSKKKADIS 120 NGNSSSDPSQ SLVFDMNTIR VTTSIPPEVS PVSVVKYKGE AADISYEPSR SDSNTTRAIN 180 RAAEPELQVE QPGRENFLGM SLDDLEQEDP KTCLQPQGPH LALNDDEFIR GLRHVDREQV 240 EYLFANEENI DGLSMNDLRI PMIVQQEDLS EWDGFNADTF FSDNNNNNNL NVHQLTRYGD 300 DYRNAGYNGG NFEGVHPYQE LIMQENRNDH MPKKPLTGTI DYSSDSSSDA GSISTTVTHI 360 THNGGNFEDV FSDLEFIMQE NHNDYRPKKS LSGIIADYSS DSDRDAVSIS ATSYKGTSSP 420 GDSVGSSNRH FLQNFGGEIL SLSKDTQTSD EPFISRKTRE SQLARCTKPS KPEVTQGMVK 480 TEKKGLFITK EAMERKRENS PYIYLINMII GFVLFLALIN DIISV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) mediated by calpain or its functional homolog. Regulates cytokinin signaling during cell division. {ECO:0000269|PubMed:17098812}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 352687 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Stabilized by cytokinins. {ECO:0000269|PubMed:17098812}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879489.1 | 0.0 | NAC domain-containing protein 69 isoform X1 | ||||
Swissprot | A8MQY1 | 1e-102 | NAC68_ARATH; NAC domain-containing protein 68 | ||||
TrEMBL | D7M4U3 | 0.0 | D7M4U3_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_6003280 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01540.2 | 1e-96 | NAC with transmembrane motif1 |
Link Out ? help Back to Top | |
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Phytozome | 352687 |
Entrez Gene | 9308957 |
Publications ? help Back to Top | |||
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