PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 349656 | ||||||||
Common Name | ARALYDRAFT_349656 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C2H2 | ||||||||
Protein Properties | Length: 327aa MW: 35295.2 Da PI: 4.33 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.7 | 9e-05 | 299 | 322 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 + C+ C+++F++ + L++H + H 349656 299 FGCKSCSRTFTSEMGLQSHTKAkH 322 56*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.783 | 299 | 326 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 301 | 322 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MESSGVEVKN GTPLHIDPGV DMLVHISQVA LGENESNVTE PIQLYVTVGQ DKLLIGTLSH 60 ERFPQLATEI VLERNFALSH TWKNGSVFFS GYKVDASDDP YPLFFVDEYH LGNCCFTLFL 120 TSLTLYLTVT DNTTDAELEA AGYRAAPKSA AKQVNFQLPN EDVKAKQDDE ADDSEEESSD 180 DDENSNSEDS GDEEVAAAVG SEEDDEDDSS DDEEDDSSEE ETPKKPEEPK KRSAEANSSK 240 NPASNKKAKF VTPQKTETKK PHVHVATPHP SKQGGNNSGG SSIGEKAKQQ QTPKSAGAFG 300 CKSCSRTFTS EMGLQSHTKA KHSAAA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Involved in the modulation of abscisic acid and stress-responsive genes. {ECO:0000269|PubMed:12694598, ECO:0000269|PubMed:16553900}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 349656 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by abscisic acid. {ECO:0000269|PubMed:16553900}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF255712 | 0.0 | AF255712.1 Arabidopsis thaliana putative histone deacetylase HD2c mRNA, complete cds. | |||
GenBank | AF372889 | 0.0 | AF372889.1 Arabidopsis thaliana AT5g03740/F17C15_160 mRNA, complete cds. | |||
GenBank | AF510168 | 0.0 | AF510168.1 Arabidopsis thaliana HDT3 mRNA, complete cds. | |||
GenBank | AY142039 | 0.0 | AY142039.1 Arabidopsis thaliana At5g03740/F17C15_160 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020878752.1 | 1e-165 | histone deacetylase HDT3 isoform X1 | ||||
Swissprot | Q9LZR5 | 1e-137 | HDT3_ARATH; Histone deacetylase HDT3 | ||||
TrEMBL | D7LWT2 | 0.0 | D7LWT2_ARALL; Uncharacterized protein | ||||
STRING | fgenesh1_pg.C_scaffold_6000249 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2027 | 26 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03740.1 | 9e-76 | histone deacetylase 2C |
Link Out ? help Back to Top | |
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Phytozome | 349656 |
Entrez Gene | 9309180 |