PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 349318
Common NameARALYDRAFT_349318
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB
Protein Properties Length: 329aa    MW: 36626 Da    PI: 6.5156
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
349318genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd++l d++k  G g+W++ ++  g++R++k+c++rw +yl
           349318 14 KGRWTAEEDQILSDYIKSNGEGSWRSLPKNAGLKRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.41.3e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+ l+v+++  lG++ W+ Ia+ ++ gRt++++k++w+++l
           349318  67 RGNITPEEENLIVKLHSTLGNR-WSIIASNLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.723961IPR017930Myb domain
SuperFamilySSF466892.24E-2811108IPR009057Homeodomain-like
SMARTSM007172.9E-121363IPR001005SANT/Myb domain
PfamPF002492.0E-141461IPR001005SANT/Myb domain
CDDcd001674.22E-91661No hitNo description
PROSITE profilePS5129424.49962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-2565115IPR009057Homeodomain-like
SMARTSM007171.3E-1666114IPR001005SANT/Myb domain
PfamPF002496.4E-1567112IPR001005SANT/Myb domain
CDDcd001672.39E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRKPCCEKV GMKKGRWTAE EDQILSDYIK SNGEGSWRSL PKNAGLKRCG KSCRLRWINY  60
LRSDLKRGNI TPEEENLIVK LHSTLGNRWS IIASNLPGRT DNEIKNYWNS HLSRKFHGYF  120
RKPTVTTVVE NAPPPPKRRP GRTSRSAMKP KFILNLKNHK NPNSLTASKT DIVLPTTTIE  180
NGEGEKEDAL MGLSSSSLSG AKEPGLRPCG YVDDGYCNPS IDGDVGVLSL NDDIFDSCFL  240
LDDPYAFHVS SCESNSVKNS EPYGGVSVGH KNIESMADDF ADWDFVWREG ETLWQEKENL  300
DSVLSWLLNG EEMESETGQR GPNDFGGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-24121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtModulates overall growth by reducing the proliferation activity of meristematic cells and delaying development (PubMed:18359753). Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1 (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:18359753, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap349318
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196020.0AY519602.1 Arabidopsis thaliana MYB transcription factor (At3g62610) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002876680.10.0transcription factor MYB11
SwissprotQ9LZK40.0MYB11_ARATH; Transcription factor MYB11
TrEMBLD7LT770.0D7LT77_ARALL; AtMYB11
STRINGfgenesh1_pg.C_scaffold_50027100.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G62610.10.0myb domain protein 11
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Huang BH, et al.
    Positive selection and functional divergence of R2R3-MYB paralogous genes expressed in inflorescence buds of Scutellaria species (Labiatae).
    Int J Mol Sci, 2015. 16(3): p. 5900-21
    [PMID:25782156]
  3. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  4. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  5. Camargo-Ramírez R,Val-Torregrosa B,San Segundo B
    MiR858-Mediated Regulation of Flavonoid-Specific MYB Transcription Factor Genes Controls Resistance to Pathogen Infection in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 190-204
    [PMID:29149328]