PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 349241 | ||||||||
Common Name | ARALYDRAFT_349241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ARF | ||||||||
Protein Properties | Length: 609aa MW: 68550.6 Da PI: 5.9861 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73 | 3.7e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k+lt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv++++L +gD +vF + +++ l+v+v 349241 128 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWSTFVSSKRLVAGDAFVFL--RGENGDLRVGV 226 89****************************9543..445569************************************************..3488889***9 PP E- CS B3 97 fr 98 +r 349241 227 RR 228 98 PP | |||||||
2 | Auxin_resp | 79 | 1.1e-26 | 254 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser...........rlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++t+++F v+Y+Pr s+F+v v+k+++a+k+ +s+G+Rf+m+fe+e+s+er r++Gt+vg+ dl++ +Wp SkWrsL+ 349241 254 ASHAVRTTTIFVVFYKPRI--SQFIVGVNKYMEAIKHGFSLGTRFRMRFEGEESPERivldsetwsvfRFTGTIVGTGDLSS-QWPASKWRSLQ 344 689***************8..9********************************99855555544444459********777.*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.32E-40 | 113 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-38 | 122 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.87E-20 | 126 | 228 | No hit | No description |
PROSITE profile | PS50863 | 12.083 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-20 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-24 | 254 | 344 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 6.5E-8 | 495 | 539 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 8.5E-13 | 502 | 579 | No hit | No description |
PROSITE profile | PS51745 | 25.792 | 503 | 584 | IPR000270 | PB1 domain |
Pfam | PF02309 | 1.4E-5 | 549 | 591 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 609 aa Download sequence Send to blast |
MASAEGDDDF GSSSSRFYQD QLYTELWKVC AGPLVEVPRA DERVFYFPQG HMEQLVASTN 60 QGIKSEEIPV FDLPPKILCR VLGITLKAEH ETDEVYAQIT LQPEEDQSEP TSLDPPLVEP 120 TKQMFHSFVK ILTASDTSTH GGFSVLRKHA TECLPALDMT QATPTQELVT RDLHGFEWRF 180 KHIFRGQPRR HLLTTGWSTF VSSKRLVAGD AFVFLRGENG DLRVGVRRLA RHQSTMPTSV 240 ISSQSMHLGV LATASHAVRT TTIFVVFYKP RISQFIVGVN KYMEAIKHGF SLGTRFRMRF 300 EGEESPERIV LDSETWSVFR FTGTIVGTGD LSSQWPASKW RSLQVQWDEP TTVQRPDKVS 360 PWEIEPFLAT SPISTPAQQP QLKCKRSRPT EPSVITPAPP SFLYSLPQSQ DSINASLKLF 420 QDPSLERNSG GYSSNNSFKP ETPPPPPRPT NCSYRLFGFD LTSNPPAPLP QDKQPMDTCG 480 AAKCQEPITP TSMNEQKKQQ TSRSRTKVQM QGIAVGRAVD LTLLKSYDEL IEELEEMFEI 540 QGQLRPRDKW IVVFTDDEGD MMLAGDDPWN EFCKMAKKIF IYSSDEVKKM ATKLKISSSL 600 ENEEYGNE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-161 | 20 | 371 | 17 | 359 | Auxin response factor 1 |
4ldw_A | 1e-161 | 20 | 371 | 17 | 359 | Auxin response factor 1 |
4ldw_B | 1e-161 | 20 | 371 | 17 | 359 | Auxin response factor 1 |
4ldx_A | 1e-161 | 20 | 371 | 17 | 359 | Auxin response factor 1 |
4ldx_B | 1e-161 | 20 | 371 | 17 | 359 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 349241 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF334717 | 0.0 | AF334717.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY059746 | 0.0 | AY059746.1 Arabidopsis thaliana auxin response factor ARF18 (At3g61830) mRNA, complete cds. | |||
GenBank | AY070463 | 0.0 | AY070463.1 Arabidopsis thaliana AT3g61830/F15G16_220 mRNA, complete cds. | |||
GenBank | AY091392 | 0.0 | AY091392.1 Arabidopsis thaliana putative auxin response factor protein (At3g61830) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020880816.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q9C5W9 | 0.0 | ARFR_ARATH; Auxin response factor 18 | ||||
TrEMBL | D7LSP8 | 0.0 | D7LSP8_ARALL; Auxin response factor | ||||
STRING | fgenesh1_pg.C_scaffold_5002633 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7435 | 18 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
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Phytozome | 349241 |
Entrez Gene | 9314485 |
Publications ? help Back to Top | |||
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