 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
348107 |
| Common Name | ARALYDRAFT_348107 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
| Family |
GRAS |
| Protein Properties |
Length: 499aa MW: 55957.6 Da PI: 4.8625 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 348107 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 328.7 | 1.1e-100 | 28 | 401 | 2 | 367 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
++lLl+cA+a++s+d++l++++L+ l+++a +dgd++qRl++ f++AL +r ++++++l+++++ + +++ + ++ l +f++++P+++f++++aN aIl
348107 28 EQLLLHCATAIDSNDAALTHQILWVLNNIAPSDGDSTQRLTSAFLRALLSRAVSKTPTLSSTISFLPPADELHRFSVVELAAFVDLTPWHRFGFIAANAAILT 130
79*****************************************************************997666666666677********************* PP
GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl...vakrledleleeLrvkp.. 198
aveg ++vHi+D+++++++Q p+L++a+a R ++pp l++T+v+s++ + + ++ee+g++L +fA++ ++++ef+++ +++ +++l l++Lr+ p
348107 131 AVEGYSTVHIVDLSLTHCMQIPTLIDAMARRLnKPPPLLKLTVVSSSDDFppfINISYEELGSKLVNFATTRNITMEFTIIpstYSDGFSSL-LQQLRIYPss 232
*******************************966777*********88889999**************************988667778888.9********* PP
GRAS 199 .gEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
+Eal+Vn++++l ++++e+++++s r+ +Lk+++sl+P++v+++e+++d++se +++r+ +a++y++ fd++++ + se+r+++E+e ++++i+nvv
348107 233 fNEALVVNCHMMLRYIPEETLTSSSssLRTVFLKTLRSLNPRIVTLIEEDVDLTSEGLVNRLKSAFNYFWIPFDTTDTLM---SEQRRWYEAE-ISWKIENVV 331
*******************9998887799**************************************************6...9*********.********* PP
GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpL 367
a+egaer+er+et+++W er++ea F+ v+++e+a++++k++l++++ ++g++ e++++slvl+Wk+ +
348107 332 AKEGAERVERTETKRRWIERMREAEFGGVRVKEEAVADVKAMLEEHAvGWGMKTEDDDESLVLTWKGSHM 401
******************************************************************9876 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 499 aa
Download sequence Send
to blast |
MTKTRILNPT RFPSPKPLRG GGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPSD 60
GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPPADELH RFSVVELAAF VDLTPWHRFG 120
FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAR RLNKPPPLLK LTVVSSSDDF 180
PPFINISYEE LGSKLVNFAT TRNITMEFTI IPSTYSDGFS SLLQQLRIYP SSFNEALVVN 240
CHMMLRYIPE ETLTSSSSSL RTVFLKTLRS LNPRIVTLIE EDVDLTSEGL VNRLKSAFNY 300
FWIPFDTTDT LMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV 360
RVKEEAVADV KAMLEEHAVG WGMKTEDDDE SLVLTWKGSH METNTAKTFS FIDFEKFDIT 420
ITTDISDVKA NFKSAIAEKG FGVTDSTAPN DTIGPQYVND IDPVRLPSCP PQPDFSTART 480
AVWWDVDSCR LPEGFDPY*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AK226623 | 0.0 | AK226623.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-29-K13. |
| GenBank | AL132978 | 0.0 | AL132978.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F3A4. |
| GenBank | BT012553 | 0.0 | BT012553.1 Arabidopsis thaliana At3g49950 gene, complete cds. |
| GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
