PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

347510

Common Name

ARALYDRAFT_347510

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

NAC

Protein Properties

Length: 332aa MW: 37546.8 Da PI: 4.8271

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
347510	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.5	1.1e-48	11	136	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103 pGf+F+Ptd el+++yLk+k++g + ++ e+i+evdiy++ePwdLp k++ ++++ew+fF+ r kky++g++++rat+ gyWkatgk+++v+s ++e++g+k 347510 11 FPGFKFSPTDIELISYYLKRKMDGLEKSV-EIIPEVDIYNFEPWDLPdKSIVKSDSEWFFFCARGKKYPHGSQNKRATRMGYWKATGKERNVKS-SSEVIGTK 111 59**********************999.99***********778888899**********************************.999* PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 +tLvf+ grapkg +t+W+mhey + 347510 112 RTLVFHIGRAPKGGRTEWIMHEYCM 136 *********************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-52	8	151	IPR003441	NAC domain
PROSITE profile	PS51005	50.996	10	152	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	12	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAAEPAVTTA FPGFKFSPTD IELISYYLKR KMDGLEKSVE IIPEVDIYNF EPWDLPDKSI 60 VKSDSEWFFF CARGKKYPHG SQNKRATRMG YWKATGKERN VKSSSEVIGT KRTLVFHIGR 120 APKGGRTEWI MHEYCMIGVS LDALVICRLR RNTEFQGATI QNPPQPSLSS DKPENLQNEA 180 ILESISGWEN MVDFYLSSES GQELLSEIAE SSQSSQNPQV PSEEDFYADI LRDEIVKLDD 240 PAILGNTLTN VPRLQTESNT TRVLPLPDMV DKQMQSLLQK LPLQNDTGEE NNISMSNCFI 300 GIYSIKSINR ARWDVVVWLL VMIAVLVFYL V*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-42	12	152	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-42	12	152	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-42	12	152	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-42	12	152	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	12	152	22	168	NAC domain-containing protein 19
3swm_B	2e-42	12	152	22	168	NAC domain-containing protein 19
3swm_C	2e-42	12	152	22	168	NAC domain-containing protein 19
3swm_D	2e-42	12	152	22	168	NAC domain-containing protein 19
3swp_A	2e-42	12	152	22	168	NAC domain-containing protein 19
3swp_B	2e-42	12	152	22	168	NAC domain-containing protein 19
3swp_C	2e-42	12	152	22	168	NAC domain-containing protein 19
3swp_D	2e-42	12	152	22	168	NAC domain-containing protein 19
4dul_A	2e-42	12	152	19	165	NAC domain-containing protein 19
4dul_B	2e-42	12	152	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcription factor involved in modulation of abscisic acid (ABA) signaling. Attenuates ABA sensitivity and glucose-induced ABA accumulation. Reduces the expression of ABI4 gene. {ECO:0000250\|UniProtKB:Q949N0, ECO:0000269\|PubMed:24625790}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	347510

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By glucose (PubMed:24625790). Induced by salt, drought stress and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:24625790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002877331.1	0.0	NAC domain-containing protein 60 isoform X1
Swissprot	Q9LXL9	0.0	NAC60_ARATH; NAC domain-containing protein 60
TrEMBL	D7LNQ5	0.0	D7LNQ5_ARALL; ANAC060
STRING	fgenesh1_pg.C_scaffold_5000902	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4309	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44290.1	0.0	NAC domain containing protein 60

Link Out ? help Back to Top
Phytozome	347510
Entrez Gene	9313399

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836]