PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 345509
Common NameARALYDRAFT_345509
Organism
Arabidopsis lyrata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family GRAS
Protein Properties Length: 741aa    MW: 83248.4 Da    PI: 6.3024
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
345509genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.16.9e-1073426961359
    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIl 103
             l++lL++cA+av+++d ++a +lL++++ +++p gd +qRla++f+++L+arla+++s++yk + +++ s    + +l+a++lf  ++P+ k+s++++N++I 
  345509 342 LRSLLIHCAQAVAADDRRCAGQLLKQIRLHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKGIVSKPRS---AAAVLKAHQLFLACCPFRKLSYFITNKTIR 441
             689***************************************************************9999...999*************************** PP

    GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaV 204
             + v +++rvH+iDf+i +G+QWp+L++ ++    g+p++RiTg++ p++g   ++++eetg+rLa +A+++gvpfe+++ +ak++++++le+L+++++E ++V
  345509 442 DLVGNSQRVHVIDFGILYGFQWPTLIHRFSM--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKQFGVPFEYKA-IAKKWDAVQLEDLDIDRDEITVV 541
             ******************************9..8***************9*****************************.7********************** PP

    GRAS 205 nlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre 307
             n+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+   +  +n++ F++rf eal ++s++fd+le+ +pre+eer+++E e++gre+ nv+aceg er+e
  345509 542 NCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVE 644
             ******************************************************************************************************* PP

    GRAS 308 rhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
             r et+++W+ r +++G+ +vp++ +++k+    +  ++ + + +++++ +++
  345509 645 RPETYKQWHVRAMRSGLVQVPFDPNIMKTSLPKVPSFYHKDFVIDQDNRWIF 696
             **************************************888******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.23316691IPR005202Transcription factor GRAS
PfamPF035142.4E-104342696IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MITEPSLTGI SGTVNRNRLS GLPDQSASHS FTPVTLYDGF NYNLSSDHRN TVVAPSQNSV  60
FIREEEEEDP ADDFDFSDAV LGYISQMLNE EDMDDKVCML QESLDLETAE RSLYEAIGKK  120
YPPSPERNLA FADRNDENLD RVVPGNYTGG DCIGFGNGGI KPLSGGFTLD FRNPSSVLSV  180
PQSNGLITIY GDGIVESSKK SLYPDSNRES HQSVWLFRSG IEEASRFLPE QNIVNFREEN  240
CMNKGRKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGEES MKEFDALREV  300
LKKGVEKKKA SVAQGGKRRE RGRGRGRGGG GGQNGKKEVV DLRSLLIHCA QAVAADDRRC  360
AGQLLKQIRL HSTPFGDGNQ RLAHCFANGL EARLAGTGSQ IYKGIVSKPR SAAAVLKAHQ  420
LFLACCPFRK LSYFITNKTI RDLVGNSQRV HVIDFGILYG FQWPTLIHRF SMYGSPKVRI  480
TGIEFPQPGF RPAQRVEETG QRLAAYAKQF GVPFEYKAIA KKWDAVQLED LDIDRDEITV  540
VNCLYRAENL HDESVKVESC RDTVLNLIGK INPDLFVFGI VNGAYNAPFF VTRFREALFH  600
FSSIFDMLET IVPREDEERM FLEMEVFGRE ALNVIACEGW ERVERPETYK QWHVRAMRSG  660
LVQVPFDPNI MKTSLPKVPS FYHKDFVIDQ DNRWIFVVSQ LGSPNGILVA RIDQRVCILL  720
AELTCLDCNT YKRKLKETNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-3734869225360Protein SCARECROW
5b3h_A2e-3734869224359Protein SCARECROW
5b3h_D2e-3734869224359Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap345509
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002879690.20.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLD7LJW70.0D7LJW7_ARALL; Uncharacterized protein
STRINGfgenesh1_pg.C_scaffold_40018510.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein